RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 SYCP1Q15431 976 aa29.93■■■□□ 2.38
SMARCD3-201ENST00000262188 NOTUMQ6P988 496 aa29.93■■■□□ 2.38
SMARCD3-201ENST00000262188 FAM186BQ8IYM0 893 aa29.93■■■□□ 2.38
SMARCD3-201ENST00000262188 CAPN2P17655 700 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 TPM4P67936 248 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 KRT31Q15323 416 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 SNRNP35Q16560 246 aaKnown RBP29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 TCTN1Q2MV58 587 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 UBXN11Q5T124 520 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 GPD1LQ8N335 351 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 TET1Q8NFU7 2136 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 PLEKHO2Q8TD55 490 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 FRMD4BQ9Y2L6 1034 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 TULP2O00295 520 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 GPR182O15218 404 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 NCBP1Q09161 790 aaKnown RBP29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 APTXQ7Z2E3 356 aaKnown RBP29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 IFIH1Q9BYX4 1025 aaKnown RBP29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 CALCOCO1Q9P1Z2 691 aa29.92■■■□□ 2.38
SMARCD3-201ENST00000262188 N4BP3O15049 544 aa29.91■■■□□ 2.38
SMARCD3-201ENST00000262188 PSMC2P35998 433 aaKnown RBP29.91■■■□□ 2.38
SMARCD3-201ENST00000262188 TWF2Q6IBS0 349 aaKnown RBP29.91■■■□□ 2.38
SMARCD3-201ENST00000262188 DEFB128Q7Z7B8 93 aa29.91■■■□□ 2.38
SMARCD3-201ENST00000262188 MAGEC2Q9UBF1 373 aaPredicted RBP29.91■■■□□ 2.38
SMARCD3-201ENST00000262188 EXTL3O43909 919 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 FGFR1OPO95684 399 aaKnown RBP29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 EPB41P11171 864 aaKnown RBP29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 MTIF2P46199 727 aaKnown RBP29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 FANCCQ00597 558 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 SLC27A1Q6PCB7 646 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 BORCS6Q96GS4 357 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 VPS16Q9H269 839 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 NXF3Q9H4D5 531 aaKnown RBP29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 OGTO15294 1046 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 DLG4P78352 724 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 PCBP1Q15365 356 aaKnown RBP eCLIP29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 FBXL18Q96ME1 805 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 APOL6Q9BWW8 343 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 TANC1Q9C0D5 1861 aa29.9■■■□□ 2.38
SMARCD3-201ENST00000262188 MEFVO15553 781 aaPredicted RBP29.89■■■□□ 2.38
SMARCD3-201ENST00000262188 MYBPC2Q14324 1141 aa29.89■■■□□ 2.38
SMARCD3-201ENST00000262188 ADPGKQ9BRR6 497 aa29.89■■■□□ 2.38
SMARCD3-201ENST00000262188 CXCL16Q9H2A7 254 aa29.89■■■□□ 2.38
SMARCD3-201ENST00000262188 TRIM49P0CI25 452 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 TRIM49CP0CI26 452 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 MCF2P10911 925 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 AXLP30530 894 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 DCAF17Q5H9S7 520 aaPredicted RBP29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 DBF4BQ8NFT6 615 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 TMEM174Q8WUU8 243 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 CCDC127Q96BQ5 260 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 POP1Q99575 1024 aaKnown RBP29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 TUBGCP2Q9BSJ2 902 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 RNF19AQ9NV58 838 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 IFNKQ9P0W0 207 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 ARMCX3Q9UH62 379 aaPredicted RBP29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 SLC16A3O15427 465 aaKnown RBP29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 SERPINC1P01008 464 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 FAM114A1Q8IWE2 563 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 FAM212AQ96EL1 285 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 ADAM2Q99965 735 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 RNF39Q9H2S5 420 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 SPTLC3Q9NUV7 552 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 SNTG2Q9NY99 539 aa29.88■■■□□ 2.37
SMARCD3-201ENST00000262188 STAG3L1P0CL83 205 aa29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 UVSSAQ2YD98 709 aa29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 RTN4RL1Q86UN2 441 aaPredicted RBP29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 C7orf61Q8IZ16 206 aa29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 LINC01599Q8WXQ3 324 aa29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 VWCEQ96DN2 955 aa29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 TRIM6Q9C030 488 aaPredicted RBP29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 LIMA1Q9UHB6 759 aaKnown RBP29.87■■■□□ 2.37
SMARCD3-201ENST00000262188 CXCL8P10145 99 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 EEF1GP26641 437 aaKnown RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 COPB1P53618 953 aaKnown RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 DSC3Q14574 896 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 TCERG1LQ5VWI1 586 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 LMBRD2Q68DH5 695 aaPredicted RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 TRIM59Q8IWR1 403 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 TNS4Q8IZW8 715 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 USP38Q8NB14 1042 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 MMRN2Q9H8L6 949 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 TOPORSQ9NS56 1045 aaPredicted RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 RBAKQ9NYW8 714 aaPredicted RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 CPSF3Q9UKF6 684 aaKnown RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 SQORQ9Y6N5 450 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 ZNF233A6NK53 670 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 MEIS3P2A8K0S8 358 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 PES1O00541 588 aaKnown RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 AKAP5P24588 427 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 SPAG1Q07617 926 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 CYP24A1Q07973 514 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 ENOX2Q16206 610 aaKnown RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 FRMD5Q7Z6J6 570 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 TMEM130Q8N3G9 435 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 SMG8Q8ND04 991 aaKnown RBP29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 MKNK1Q9BUB5 465 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 PDE11AQ9HCR9 933 aa29.86■■■□□ 2.37
SMARCD3-201ENST00000262188 KIAA0355O15063 1070 aa29.85■■■□□ 2.37
SMARCD3-201ENST00000262188 RAG1P15918 1043 aa29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms