RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 KRT10P13645 584 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 VCAM1P19320 739 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 CA4P22748 312 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 SLMAPQ14BN4 828 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 ZNF720Q7Z2F6 126 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 RASGEF1CQ8N431 466 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 IFT74Q96LB3 600 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 ZNF317Q96PQ6 595 aaPredicted RBP12.79□□□□□ -0.36
USHBP1-201ENST00000252597 DONSONQ9NYP3 566 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 LARSQ9P2J5 1176 aaKnown RBP12.79□□□□□ -0.36
USHBP1-201ENST00000252597 CTDP1Q9Y5B0 961 aaPredicted RBP12.79□□□□□ -0.36
USHBP1-201ENST00000252597 EXOC1LA0A1B0GW35 172 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 PPIP5K2O43314 1243 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 CLK2P49760 499 aaKnown RBP12.79□□□□□ -0.36
USHBP1-201ENST00000252597 JAM2P57087 298 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 PLCB4Q15147 1175 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 XKR9Q5GH70 373 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 WDR18Q9BV38 432 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 RGS17Q9UGC6 210 aaPredicted RBP12.79□□□□□ -0.36
USHBP1-201ENST00000252597 PARP2Q9UGN5 583 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 MYH7BA7E2Y1 1941 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 SCN7AQ01118 1682 aa12.79□□□□□ -0.36
USHBP1-201ENST00000252597 PPEF1O14829 653 aaPredicted RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 POLR2MP0CAP2 368 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 TNNI1P19237 187 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 MMP13P45452 471 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 EN1Q05925 392 aaPredicted RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 XRCC4Q13426 336 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 GNPTABQ3T906 1256 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 FITM2Q8N6M3 262 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 FBF1Q8TES7 1133 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 TLCD1Q96CP7 247 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 ADAM7Q9H2U9 754 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 EPB41L4BQ9H329 900 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 ARHGEF10LQ9HCE6 1279 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 PRR12Q9ULL5 1215 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 IPO5O00410 1097 aaKnown RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 LGR5O75473 907 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 GAP43P17677 238 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 EIF2AK2P19525 551 aaKnown RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 MARSP56192 900 aaKnown RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 EPM2AIP1Q7L775 607 aaPredicted RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 SLFN11Q7Z7L1 901 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 DTX3LQ8TDB6 740 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 POMGNT1Q8WZA1 660 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 NACC1Q96RE7 527 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 CCDC77Q9BR77 488 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 METTL5Q9NRN9 209 aaKnown RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 LAMB2P55268 1798 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 TESPA1A2RU30 521 aaPredicted RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 BANF1O75531 89 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 CBX6O95503 412 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 COPS2P61201 443 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 NCALDP61601 193 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 SPIRE1Q08AE8 756 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 HHATQ5VTY9 493 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 ARAP2Q8WZ64 1704 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 FAM20AQ96MK3 541 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 UNC45AQ9H3U1 944 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 SERPINA10Q9UK55 444 aa12.78□□□□□ -0.36
USHBP1-201ENST00000252597 ATF5Q9Y2D1 282 aaPredicted RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 R3HDM2Q9Y2K5 976 aaKnown RBP12.78□□□□□ -0.36
USHBP1-201ENST00000252597 A0A0G2JND7 137 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 RALAP11233 206 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 ALAS1P13196 640 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 ETS1P14921 441 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 SMARCA1P28370 1054 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 MSH2P43246 934 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 MPP2Q14168 576 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 ATP13A4Q4VNC1 1196 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 LONP2Q86WA8 852 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 PLVAPQ9BX97 442 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 HSPBP1Q9NZL4 362 aa12.77□□□□□ -0.36
USHBP1-201ENST00000252597 MYH1P12882 1939 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 MYH4Q9Y623 1939 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 RARGP13631 454 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 RAD23BP54727 409 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 AP3B2Q13367 1082 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 RASA3Q14644 834 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 SEZ6Q53EL9 994 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 DEFB132Q7Z7B7 95 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 RUNDC3BQ96NL0 473 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 PI4KBQ9UBF8 816 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 NAALADL1Q9UQQ1 740 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 CENPFP49454 3210 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 SLC16A3O15427 465 aaKnown RBP12.77□□□□□ -0.37
USHBP1-201ENST00000252597 RRM1P23921 792 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 PRELPP51888 382 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 NOP14P78316 857 aaKnown RBP12.77□□□□□ -0.37
USHBP1-201ENST00000252597 POU5F1Q01860 360 aaKnown RBP12.77□□□□□ -0.37
USHBP1-201ENST00000252597 MDH1BQ5I0G3 518 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 IZUMO3Q5VZ72 239 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 SPOPLQ6IQ16 392 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 XXYLT1Q8NBI6 393 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 TAS1R2Q8TE23 839 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 LENG9Q96B70 501 aa12.77□□□□□ -0.37
USHBP1-201ENST00000252597 MIF4GDA9UHW6 222 aaKnown RBP12.76□□□□□ -0.37
USHBP1-201ENST00000252597 PTGIRP43119 386 aa12.76□□□□□ -0.37
USHBP1-201ENST00000252597 GABPAQ06546 454 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms