RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SERPINB4P48594 390 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 MTHFD1LQ6UB35 978 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 C18orf8Q96DM3 657 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 SLC13A1Q9BZW2 595 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 SCHIP1Q9P0W5 487 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-201ENST00000215793 HECW2Q9P2P5 1572 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 RHOBTB3O94955 611 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 SRGNP10124 158 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 CYP2C19P33261 490 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 ZNF543Q08ER8 600 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 BTBD8Q5XKL5 378 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 TEX2Q8IWB9 1127 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 AFG1LQ8WV93 481 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 EPAS1Q99814 870 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 SPON2Q9BUD6 331 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 APEX2Q9UBZ4 518 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 CYP26A1O43174 497 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 NMT1P30419 496 aaKnown RBP14.34□□□□□ -0.11
SF3A1-201ENST00000215793 NME3Q13232 169 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 CYFIP1Q7L576 1253 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 RNF149Q8NC42 400 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 FAM161BQ96MY7 647 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 EGFL8Q99944 293 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 TRIM45Q9H8W5 580 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-201ENST00000215793 ADA2Q9NZK5 511 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 TEKT2Q9UIF3 430 aa14.34□□□□□ -0.11
SF3A1-201ENST00000215793 GUCY1A2P33402 732 aa14.33□□□□□ -0.11
SF3A1-201ENST00000215793 HSPA9P38646 679 aaKnown RBP14.33□□□□□ -0.11
SF3A1-201ENST00000215793 FASTKD5Q7L8L6 764 aaKnown RBP14.33□□□□□ -0.11
SF3A1-201ENST00000215793 RASSF3Q86WH2 238 aa14.33□□□□□ -0.11
SF3A1-201ENST00000215793 RCOR2Q8IZ40 523 aa14.33□□□□□ -0.11
SF3A1-201ENST00000215793 KIRREL3Q8IZU9 778 aa14.33□□□□□ -0.11
SF3A1-201ENST00000215793 ABTB1Q969K4 478 aaPredicted RBP14.33□□□□□ -0.11
SF3A1-201ENST00000215793 KDM6BO15054 1643 aa14.33□□□□□ -0.11
SF3A1-201ENST00000215793 HNRNPCL2B2RXH8 293 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 HNRNPCL1O60812 293 aaKnown RBP14.33□□□□□ -0.12
SF3A1-201ENST00000215793 TBCCQ15814 346 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 WDR72Q3MJ13 1102 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 RAPGEF5Q92565 580 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 LPAR1Q92633 364 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 SMG5Q9UPR3 1016 aaKnown RBP14.33□□□□□ -0.12
SF3A1-201ENST00000215793 NBPF26B4DH59 902 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 ANKRD65E5RJM6 399 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 DPYSL4O14531 572 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 ZNF197O14709 1029 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 AGTP01019 485 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 EIF3EP60228 445 aaKnown RBP14.33□□□□□ -0.12
SF3A1-201ENST00000215793 PTK2BQ14289 1009 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 EDRF1Q3B7T1 1238 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 FASTKD1Q53R41 847 aaKnown RBP14.33□□□□□ -0.12
SF3A1-201ENST00000215793 NBPF15Q8N660 670 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 SIK2Q9H0K1 926 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 SARS2Q9NP81 518 aaKnown RBP14.33□□□□□ -0.12
SF3A1-201ENST00000215793 MYO1DO94832 1006 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 PRKCBP05771 671 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 LRRC23Q53EV4 343 aaPredicted RBP14.33□□□□□ -0.12
SF3A1-201ENST00000215793 RGS9BPQ6ZS82 235 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 LZICQ8WZA0 190 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 WDR24Q96S15 920 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 VIPAS39Q9H9C1 493 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 RGL1Q9NZL6 768 aa14.33□□□□□ -0.12
SF3A1-201ENST00000215793 CCDC195A0A1B0GUA6 201 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 CDH16O75309 829 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 MOCS2O96007 188 aaPredicted RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 HADHAP40939 763 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 ZNF235Q14590 738 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 KCTD17Q8N5Z5 321 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 RPAP3Q9H6T3 665 aaPredicted RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 HSPBP1Q9NZL4 362 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 ABCC3O15438 1527 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 RALAP11233 206 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 LBRQ14739 615 aaKnown RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 NFIXQ14938 502 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 LRRC14Q15048 493 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 SZRD1Q7Z422 152 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 ASAP3Q8TDY4 903 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 OTUD5Q96G74 571 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 ZNF512BQ96KM6 892 aaPredicted RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 TEX13BQ9BXU2 312 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 PPCSQ9HAB8 311 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 MOSPD1Q9UJG1 213 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 MORC2Q9Y6X9 1032 aaPredicted RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 CFAP69A5D8W1 941 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 COG2Q14746 738 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 VEPH1Q14D04 833 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 SLC26A7Q8TE54 656 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 NYAP2Q9P242 653 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 PDS5AQ29RF7 1337 aaKnown RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 PPP1R37O75864 691 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 TMED1Q13445 227 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 MTF1Q14872 753 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 RASGRP2Q7LDG7 609 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 IGDCC4Q8TDY8 1250 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 SH3TC2Q8TF17 1288 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 FOXP3Q9BZS1 431 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 CHCHD3Q9NX63 227 aaKnown RBP14.32□□□□□ -0.12
SF3A1-201ENST00000215793 USP31Q70CQ4 1352 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 MED14O60244 1454 aa14.32□□□□□ -0.12
SF3A1-201ENST00000215793 HOXD10P28358 340 aa14.31□□□□□ -0.12
SF3A1-201ENST00000215793 VSNL1P62760 191 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms