RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 MARCH8Q5T0T0 291 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 TAF2Q6P1X5 1199 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 NFRKBQ6P4R8 1299 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 WDR59Q6PJI9 974 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 NYAP1Q6ZVC0 841 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 SESTD1Q86VW0 696 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 SLAIN1Q8ND83 568 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 TRAPPC12Q8WVT3 735 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 PPP1R13BQ96KQ4 1090 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 NLRP4Q96MN2 994 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 MTG1Q9BT17 334 aaPredicted RBP11.48□□□□□ -0.57
CLN3-248ENST00000636355 MSTO1Q9BUK6 570 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 INO80BQ9C086 356 aaPredicted RBP11.48□□□□□ -0.57
CLN3-248ENST00000636355 ARHGAP39Q9C0H5 1083 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 INTS2Q9H0H0 1204 aaKnown RBP11.48□□□□□ -0.57
CLN3-248ENST00000636355 PCIF1Q9H4Z3 704 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 IFT122Q9HBG6 1241 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 LUC7LQ9NQ29 371 aaKnown RBP11.48□□□□□ -0.57
CLN3-248ENST00000636355 AGPAT5Q9NUQ2 364 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 AIPL1Q9NZN9 384 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 GABRQQ9UN88 632 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 AKT3Q9Y243 479 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 PPP2R2CQ9Y2T4 447 aa11.48□□□□□ -0.57
CLN3-248ENST00000636355 TRIP12Q14669 1992 aaPredicted RBP11.47□□□□□ -0.57
CLN3-248ENST00000636355 SOWAHDA6NJG2 315 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 LRRC53A6NM62 1247 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 EIF3CLB5ME19 914 aaKnown RBP11.47□□□□□ -0.57
CLN3-248ENST00000636355 INO80B-WBP1J3KQ70 363 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 ABLIM1O14639 778 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 FAM189A1O60320 539 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 OFD1O75665 1012 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 CABYRO75952 493 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 NDUFA10O95299 355 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 SERPING1P05155 500 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 TRIM49P0CI25 452 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 TRIM49CP0CI26 452 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 MCF2P10911 925 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 PRKCIP41743 596 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 GPC3P51654 580 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 JAM2P57087 298 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 SLC9C1Q4G0N8 1177 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 CBWD6Q4V339 395 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 CBWD3Q5JTY5 395 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 CBWD5Q5RIA9 395 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 PRAMEF19Q5SWL8 479 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 C1orf220Q5T0J3 134 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 ATF7IP2Q5U623 682 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 SFMBT2Q5VUG0 894 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 DPY19L2P1Q6NXN4 242 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 C15orf39Q6ZRI6 1047 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 RRAGAQ7L523 313 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 ENOSF1Q7L5Y1 443 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 NME8Q8N427 588 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 EHBP1Q8NDI1 1231 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 FBXL13Q8NEE6 735 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 TRPV1Q8NER1 839 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 SAAL1Q96ER3 474 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 SPAG5Q96R06 1193 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 FNBP1Q96RU3 617 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 EIF3CQ99613 913 aaKnown RBP11.47□□□□□ -0.57
CLN3-248ENST00000636355 CGRRF1Q99675 332 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 TARS2Q9BW92 718 aaKnown RBP11.47□□□□□ -0.57
CLN3-248ENST00000636355 PTPRHQ9HD43 1115 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 SIX2Q9NPC8 291 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 RBAKQ9NYW8 714 aaPredicted RBP11.47□□□□□ -0.57
CLN3-248ENST00000636355 ANKFY1Q9P2R3 1169 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 MYO1AQ9UBC5 1043 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 ADGRG1Q9Y653 693 aa11.47□□□□□ -0.57
CLN3-248ENST00000636355 LRRIQ3A6PVS8 624 aaPredicted RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 RBAK-RBAKDNI3L0D1 243 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 RNF225M0QZC1 329 aaPredicted RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 GPR25O00155 361 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 FKTNO75072 461 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 ADAMTS4O75173 837 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 IL18RAPO95256 599 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 LCA5LO95447 670 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 MYL3P08590 195 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 C6orf222P0C671 652 aaPredicted RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 SRGAP2CP0DJJ0 459 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 PRKAR2AP13861 404 aaKnown RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 FERP16591 822 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 AXLP30530 894 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 VEGFBP49765 207 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 IGBP1P78318 339 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 PPP3CAQ08209 521 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 CACNB2Q08289 660 aaPredicted RBP11.46□□□□□ -0.57
CLN3-248ENST00000636355 GOLGA8FQ08AF8 430 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 GOLGA8DPQ0D2H9 430 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 PTPN14Q15678 1187 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 AMHR2Q16671 573 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 DCAF4L1Q3SXM0 396 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 ZNF568Q3ZCX4 644 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 ZACNQ401N2 412 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 RAD9BQ6WBX8 426 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 RPAINQ86UA6 219 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 VPS36Q86VN1 386 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 WDR49Q8IV35 697 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 KIAA0319LQ8IZA0 1049 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 CCDC155Q8N6L0 562 aa11.46□□□□□ -0.57
CLN3-248ENST00000636355 PCSK9Q8NBP7 692 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms