RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CNOT6LQ96LI5 555 aaKnown RBP22.47■■□□□ 1.19
CLN3-245ENST00000636172 AGO2Q9UKV8 859 aaKnown RBP22.47■■□□□ 1.19
CLN3-245ENST00000636172 GOLGA8IPA6NC78 632 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 GOLGA8JA6NMD2 632 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 KCNJ18B7U540 433 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 GPR182O15218 404 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 SLC16A3O15427 465 aaKnown RBP22.46■■□□□ 1.19
CLN3-245ENST00000636172 FAM189A1O60320 539 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 HARSP12081 509 aaKnown RBP22.46■■□□□ 1.19
CLN3-245ENST00000636172 NFX1Q12986 1120 aaKnown RBP22.46■■□□□ 1.19
CLN3-245ENST00000636172 KCNJ12Q14500 433 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 FAM114A1Q8IWE2 563 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 FBXL18Q96ME1 805 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 PPP1R12CQ9BZL4 782 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 WNT8AQ9H1J5 351 aa22.46■■□□□ 1.19
CLN3-245ENST00000636172 KIAA0391O15091 583 aaKnown RBP22.45■■□□□ 1.18
CLN3-245ENST00000636172 CYP2C18P33260 490 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 GPNMBQ14956 572 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 UVSSAQ2YD98 709 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 TCP11X2Q5H9J9 407 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 GPD1LQ8N335 351 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 MKNK1Q9BUB5 465 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 GRPEL1Q9HAV7 217 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 FRMD4BQ9Y2L6 1034 aa22.45■■□□□ 1.18
CLN3-245ENST00000636172 SCN5AQ14524 2016 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 EXTL3O43909 919 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 NBNO60934 754 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 GNA14O95837 355 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 MCF2P10911 925 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 EEF1GP26641 437 aaKnown RBP22.44■■□□□ 1.18
CLN3-245ENST00000636172 PSMC2P35998 433 aaKnown RBP22.44■■□□□ 1.18
CLN3-245ENST00000636172 ZBTB41Q5SVQ8 909 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 SLC27A1Q6PCB7 646 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 CBWD2Q8IUF1 395 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 FAM186BQ8IYM0 893 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 FAM213AQ9BRX8 229 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 TMX1Q9H3N1 280 aa22.44■■□□□ 1.18
CLN3-245ENST00000636172 MAGEC2Q9UBF1 373 aaPredicted RBP22.44■■□□□ 1.18
CLN3-245ENST00000636172 OGTO15294 1046 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 ADRB2P07550 413 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 EPB41P11171 864 aaKnown RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 CDK11BP21127 795 aaKnown RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 CCL23P55773 120 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 MARSP56192 900 aaKnown RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 SPAG1Q07617 926 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 SNRNP35Q16560 246 aaKnown RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 CCDC40Q4G0X9 1142 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 UBXN11Q5T124 520 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 CRELD2Q6UXH1 353 aaPredicted RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 RDH13Q8NBN7 331 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 CCDC51Q96ER9 411 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 BORCS6Q96GS4 357 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 SCLYQ96I15 445 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 ADPGKQ9BRR6 497 aa22.43■■□□□ 1.18
CLN3-245ENST00000636172 EIF2AQ9BY44 585 aaKnown RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 TNRC18O15417 2968 aaPredicted RBP22.43■■□□□ 1.18
CLN3-245ENST00000636172 TRIM43BA6NCK2 446 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 KIAA0355O15063 1070 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 MAPK13O15264 365 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 NPTXRO95502 500 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 ACOT2P49753 483 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 KRT31Q15323 416 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 DCAF4L1Q3SXM0 396 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 SEZ6Q53EL9 994 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 APTXQ7Z2E3 356 aaKnown RBP22.42■■□□□ 1.18
CLN3-245ENST00000636172 FRMD5Q7Z6J6 570 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 CREBRFQ8IUR6 639 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 CEP120Q8N960 986 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 TRIM43Q96BQ3 446 aaPredicted RBP22.42■■□□□ 1.18
CLN3-245ENST00000636172 IFIH1Q9BYX4 1025 aaKnown RBP22.42■■□□□ 1.18
CLN3-245ENST00000636172 KIAA1586Q9HCI6 787 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 PRDM5Q9NQX1 630 aaPredicted RBP22.42■■□□□ 1.18
CLN3-245ENST00000636172 CHST12Q9NRB3 414 aa22.42■■□□□ 1.18
CLN3-245ENST00000636172 LIMA1Q9UHB6 759 aaKnown RBP22.42■■□□□ 1.18
CLN3-245ENST00000636172 LDHAP00338 332 aaKnown RBP22.41■■□□□ 1.18
CLN3-245ENST00000636172 DSC3Q14574 896 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 THNSL1Q8IYQ7 743 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 ARMCX3Q9UH62 379 aaPredicted RBP22.41■■□□□ 1.18
CLN3-245ENST00000636172 TET1Q8NFU7 2136 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 AP5Z1O43299 807 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 MGEA5O60502 916 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 ITGB8P26012 769 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 TNFSF9P41273 254 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 TWF2Q6IBS0 349 aaKnown RBP22.41■■□□□ 1.18
CLN3-245ENST00000636172 APBB1IPQ7Z5R6 666 aaPredicted RBP22.41■■□□□ 1.18
CLN3-245ENST00000636172 TRIM59Q8IWR1 403 aa22.41■■□□□ 1.18
CLN3-245ENST00000636172 METTL14Q9HCE5 456 aaKnown RBP22.41■■□□□ 1.18
CLN3-245ENST00000636172 CPSF3Q9UKF6 684 aaKnown RBP22.41■■□□□ 1.18
CLN3-245ENST00000636172 LRRC10BA6NIK2 292 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 ZNF233A6NK53 670 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 PARNO95453 639 aaKnown RBP22.4■■□□□ 1.18
CLN3-245ENST00000636172 TIMP1P01033 207 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 MTIF2P46199 727 aaKnown RBP22.4■■□□□ 1.18
CLN3-245ENST00000636172 MRE11P49959 708 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 FANCCQ00597 558 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 CYP24A1Q07973 514 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 HSP90AA2PQ14568 343 aaPredicted RBP22.4■■□□□ 1.18
CLN3-245ENST00000636172 PLEKHG4Q58EX7 1191 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 TMEM192Q8IY95 271 aa22.4■■□□□ 1.18
CLN3-245ENST00000636172 MFSD14AQ96MC6 490 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms