RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ARMC9Q7Z3E5 817 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 MAP4K3Q8IVH8 894 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 CNPY4Q8N129 248 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 FBXO25Q8TCJ0 367 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 HELQQ8TDG4 1101 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 RAPGEF5Q92565 580 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 SEMA4DQ92854 862 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 RNF25Q96BH1 459 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM109Q9BVC6 243 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 FAM129AQ9BZQ8 928 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 VEZTQ9HBM0 779 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 UVRAGQ9P2Y5 699 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TULP1O00294 542 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 CYP26A1O43174 497 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 C21orf2O43822 256 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 RAD17O75943 681 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 JAK3P52333 1124 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 PLTPP55058 493 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 ENPEPQ07075 957 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 MESDQ14696 234 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 SIX1Q15475 284 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 SNRNP35Q16560 246 aaKnown RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 KRT39Q6A163 491 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 MMS22LQ6ZRQ5 1243 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 SUGP1Q8IWZ8 645 aaKnown RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 C12orf50Q8NA57 414 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM161BQ8NDZ6 487 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TMC2Q8TDI7 906 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 PARD3BQ8TEW8 1205 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 BBXQ8WY36 941 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 LPAR1Q92633 364 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 ZBED3Q96IU2 234 aaPredicted RBP13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM8AQ9HCN3 771 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 TBX20Q9UMR3 447 aa13.73□□□□□ -0.21
LINC00540-203ENST00000631321 CAND2O75155 1236 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 SHBGP04278 402 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 PYGMP11217 842 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 GTF2H1P32780 548 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 RPL21P46778 160 aaKnown RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 CDR2Q01850 454 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 DENND2CQ68D51 928 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 CROCCP2Q86T23 111 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 SLC47A2Q86VL8 602 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 SLC13A5Q86YT5 568 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 CBWD2Q8IUF1 395 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 ZNF564Q8TBZ8 553 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 FBXL18Q96ME1 805 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 ZNF341Q9BYN7 854 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 SLC38A10Q9HBR0 1119 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 GPRC5CQ9NQ84 441 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 DDX20Q9UHI6 824 aaKnown RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 CCDC169A6NNP5 214 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM110-MUSTN1A8MSY1 372 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 ANKRD63C9JTQ0 380 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 MMEP08473 750 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 CYP11B1P15538 503 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 SFNP31947 248 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 COILP38432 576 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 USP8P40818 1118 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 MAP2K1Q02750 393 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 PPM1KQ8N3J5 372 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 SPIRE2Q8WWL2 714 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 DDX1Q92499 740 aaKnown RBP13.72□□□□□ -0.21
LINC00540-203ENST00000631321 TATDN2Q93075 761 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 MFSD14AQ96MC6 490 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 NUP85Q9BW27 656 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 MTUS1Q9ULD2 1270 aa13.72□□□□□ -0.21
LINC00540-203ENST00000631321 FAM170AA1A519 330 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 TMEM150BA6NC51 233 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 GOLGA8IPA6NC78 632 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 GOLGA8JA6NMD2 632 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 PHF20L1A8MW92 1017 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 WDR64B1ANS9 1081 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 CCNE2O96020 404 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 CDR1P51861 262 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 KRT76Q01546 638 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 PGM5Q15124 567 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 PLCB4Q15147 1175 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 ERMARDQ5T6L9 678 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 CCDC137Q6PK04 289 aaKnown RBP13.71□□□□□ -0.21
LINC00540-203ENST00000631321 RTKN2Q8IZC4 609 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 RDM1Q8NG50 284 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 TAAR1Q96RJ0 339 aa13.71□□□□□ -0.21
LINC00540-203ENST00000631321 MTRF1LQ9UGC7 380 aaKnown RBP13.71□□□□□ -0.21
LINC00540-203ENST00000631321 ZBTB12Q9Y330 459 aaPredicted RBP13.71□□□□□ -0.21
LINC00540-203ENST00000631321 GRIN3BO60391 1043 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 MMP13P45452 471 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 NPTX2P47972 431 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 SMTNP53814 917 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 FAM102BQ5T8I3 360 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 CYFIP1Q7L576 1253 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 AGBL3Q8NEM8 1001 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 PSPC1Q8WXF1 523 aaKnown RBP13.71□□□□□ -0.22
LINC00540-203ENST00000631321 SLCO2A1Q92959 643 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 ART4Q93070 314 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 NTPCRQ9BSD7 190 aaKnown RBP13.71□□□□□ -0.22
LINC00540-203ENST00000631321 KIAA1683Q9H0B3 1180 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 LRRC19Q9H756 370 aa13.71□□□□□ -0.22
LINC00540-203ENST00000631321 CHORDC1Q9UHD1 332 aaPredicted RBP13.71□□□□□ -0.22
LINC00540-203ENST00000631321 CAPN7Q9Y6W3 813 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms