RNA–Protein interactions for RNA: ENST00000621967.4

FAM3A-222, Transcript of family with sequence similarity 3 member A, human

TSL 2

Gene FAM3A, Length 1,901 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM3A-222	ENST00000621967	HSPA1A	P0DMV8	641 aa	Known RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	HSPA1B	P0DMV9	641 aa	Known RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	SOX5	P35711	763 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	SKOR1	P84550	965 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	SEPT14	Q6ZU15	432 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	FBXO16	Q8IX29	292 aa	Predicted RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	LNX1	Q8TBB1	728 aa	Predicted RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	RAET1E	Q8TD07	263 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	LMBR1	Q8WVP7	490 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	GPRASP2	Q96D09	838 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	CDHR1	Q96JP9	859 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	SYT11	Q9BT88	431 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	STK33	Q9BYT3	514 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	GOLPH3	Q9H4A6	298 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	FLRT1	Q9NZU1	646 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	SUCLA2	Q9P2R7	463 aa	Predicted RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	WRAP73	Q9P2S5	460 aa	Predicted RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	DAAM1	Q9Y4D1	1078 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	WDR81	Q562E7	1941 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	CHMP2A	O43633	222 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	EVI5	O60447	810 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	IRAK1	P51617	712 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	PPP2R5A	Q15172	486 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	STXBP4	Q6ZWJ1	553 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	DNAAF5	Q86Y56	855 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	RASGEF1C	Q8N431	466 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	METTL13	Q8N6R0	699 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	IFT81	Q8WYA0	676 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	PIK3R5	Q8WYR1	880 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	CCDC43	Q96MW1	224 aa	Known RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	STRA6	Q9BX79	667 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	AGPAT3	Q9NRZ7	376 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	KCNH7	Q9NS40	1196 aa		18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	FEZ2	Q9UHY8	353 aa	Predicted RBP	18.88	■□□□□ 0.61
FAM3A-222	ENST00000621967	GRIN2D	O15399	1336 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	PGRMC1	O00264	195 aa	Known RBP	18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	PPP1R37	O75864	691 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	GUCY2C	P25092	1073 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	PRMT2	P55345	433 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	IRF5	Q13568	498 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	CFAP58	Q5T655	872 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	FAM178B	Q8IXR5	827 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	SYCE1	Q8N0S2	351 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	C1orf131	Q8NDD1	294 aa	Known RBP	18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.87	■□□□□ 0.61	4e-6	■■□□□ 12.7
FAM3A-222	ENST00000621967	ZNF577	Q9BSK1	485 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	CAPS2	Q9BXY5	557 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	ISCU	Q9H1K1	167 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	UNC45A	Q9H3U1	944 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	VTA1	Q9NP79	307 aa		18.87	■□□□□ 0.61
FAM3A-222	ENST00000621967	MAFG	O15525	162 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	RGS20	O76081	388 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	SNAI1	O95863	264 aa	Predicted RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	AR	P10275	920 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	HSPA8	P11142	646 aa	Known RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	HSPA9	P38646	679 aa	Known RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	RNASE9	P60153	205 aa	Known RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	HS2ST1	Q7LGA3	356 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	NT5DC3	Q86UY8	548 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	SLC9A9	Q8IVB4	645 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	U2AF1L4	Q8WU68	220 aa	Known RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	HES6	Q96HZ4	224 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	GPR88	Q9GZN0	384 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	ABHD16B	Q9H3Z7	469 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	PKD2L1	Q9P0L9	805 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	NOC2L	Q9Y3T9	749 aa	Known RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	ZNF233	A6NK53	670 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	CCDC188	H7C350	402 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	CEP104	O60308	925 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	ECHS1	P30084	290 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	CTCF	P49711	727 aa	Predicted RBP	18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	GALC	P54803	685 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	TRADD	Q15628	312 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	MFSD14C	Q5VZR4	134 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	PEX26	Q7Z412	305 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	FMNL3	Q8IVF7	1028 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	KLHL7	Q8IXQ5	586 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	TRIB2	Q92519	343 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	FRMD4B	Q9Y2L6	1034 aa		18.86	■□□□□ 0.61
FAM3A-222	ENST00000621967	KIAA1217	Q5T5P2	1943 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967		A6NNZ2	444 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	IPO5	O00410	1097 aa	Known RBP	18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	MAPK7	Q13164	816 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	CUL1	Q13616	776 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	MYBPC2	Q14324	1141 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	DRAP1	Q14919	205 aa	Predicted RBP	18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	TUBB8	Q3ZCM7	444 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	CBWD6	Q4V339	395 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	CBWD3	Q5JTY5	395 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	CBWD5	Q5RIA9	395 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	EMC10	Q5UCC4	262 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	KSR1	Q8IVT5	923 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	NEK9	Q8TD19	979 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	TEKT3	Q9BXF9	490 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	AGO4	Q9HCK5	861 aa	Known RBP	18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	RSPH14	Q9UHP6	348 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	DNAJC12	Q9UKB3	198 aa		18.85	■□□□□ 0.61
FAM3A-222	ENST00000621967	EIF3H	O15372	352 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
FAM3A-222	ENST00000621967	ADCY3	O60266	1144 aa		18.84	■□□□□ 0.61
FAM3A-222	ENST00000621967	TMEM253	P0C7T8	217 aa		18.84	■□□□□ 0.61

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