RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CT47A1Q5JQC4 288 aaPredicted RBP11.39□□□□□ -0.59
VPS11-208ENST00000621676 MPHOSPH6Q99547 160 aaKnown RBP11.39□□□□□ -0.59
VPS11-208ENST00000621676 KLHL11Q9NVR0 708 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 PARP2Q9UGN5 583 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 PLAGL2Q9UPG8 496 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 MYH10P35580 1976 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 KRT86O43790 486 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 ERLIN2O94905 339 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 MMEP08473 750 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 MTM1Q13496 603 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 WDR72Q3MJ13 1102 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 KLHL7Q8IXQ5 586 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 NOA1Q8NC60 698 aaKnown RBP11.39□□□□□ -0.59
VPS11-208ENST00000621676 MYRIPQ8NFW9 859 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 SECISBP2LQ93073 1101 aaKnown RBP11.39□□□□□ -0.59
VPS11-208ENST00000621676 CEP63Q96MT8 703 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 AP1M1Q9BXS5 423 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 TMEM206Q9H813 350 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 ERAP1Q9NZ08 941 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 MYPNQ86TC9 1320 aa11.39□□□□□ -0.59
VPS11-208ENST00000621676 MEIS3P2A8K0S8 358 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 ARHGAP1Q07960 439 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 MESDQ14696 234 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 CCDC142Q17RM4 750 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 EDRF1Q3B7T1 1238 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 CATSPER4Q7RTX7 472 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 RPUSD2Q8IZ73 545 aaKnown RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 C7orf31Q8N865 590 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 PARD3BQ8TEW8 1205 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 KIFAP3Q92845 792 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 TTYH3Q9C0H2 523 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 NOD1Q9Y239 953 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 MAFBQ9Y5Q3 323 aaPredicted RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 ASB14A6NK59 587 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 SLU7O95391 586 aaKnown RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 GH1P01241 217 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 MAPTP10636 758 aaKnown RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 MYL6P60660 151 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 CETN1Q12798 172 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 IFNL1Q8IU54 200 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 ANKEF1Q9NU02 776 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 POLIQ9UNA4 740 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 INPP5FQ9Y2H2 1132 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 COL2A1P02458 1487 aaPredicted RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 ATP2A1O14983 1001 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 MAFGO15525 162 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 RARBP10826 455 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 AFF1P51825 1210 aaKnown RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 HIC1Q14526 733 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 CCDC181Q5TID7 509 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 B4GALNT4Q76KP1 1039 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 FRMD5Q7Z6J6 570 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 DAAM2Q86T65 1068 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 SMARCAD1Q9H4L7 1026 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 GINM1Q9NU53 330 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 CTTNBP2NLQ9P2B4 639 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 PCDHB4Q9Y5E5 795 aa11.38□□□□□ -0.59
VPS11-208ENST00000621676 TIMM13Q9Y5L4 95 aaPredicted RBP11.38□□□□□ -0.59
VPS11-208ENST00000621676 COL11A1P12107 1806 aaPredicted RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 A0A1W2PQC6 194 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 CYP2C9P11712 490 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 ZNF131P52739 623 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 TRPC3Q13507 836 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 CCDC62Q6P9F0 684 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 ZNF710Q8N1W2 664 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 GPD1LQ8N335 351 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 CD99L2Q8TCZ2 262 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 SH3TC2Q8TF17 1288 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 ATP8B4Q8TF62 1192 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 LPPQ93052 612 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 DNAJC7Q99615 494 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 NUP58Q9BVL2 599 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 THAP2Q9H0W7 228 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 DBR1Q9UK59 544 aaKnown RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 GPR25O00155 361 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 KCNK3O14649 394 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 GRAP2O75791 330 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 TMEM191BP0C7N4 346 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 GTF2BQ00403 316 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 NCBP1Q09161 790 aaKnown RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 IFRD2Q12894 506 aaPredicted RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 GRIK4Q16099 956 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 HGSNATQ68CP4 663 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 RUFY4Q6ZNE9 571 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 ZBTB8OSQ8IWT0 167 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 METTL14Q9HCE5 456 aaKnown RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 RNF186Q9NXI6 227 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 CEP72Q9P209 647 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 EXOC7Q9UPT5 735 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 PIN4Q9Y237 131 aaKnown RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 ARFGEF1Q9Y6D6 1849 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 SBF1O95248 1867 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 ZSCAN5CA6NGD5 496 aaPredicted RBP11.37□□□□□ -0.59
VPS11-208ENST00000621676 GOLGA8SH3BPF8 625 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 GNA14O95837 355 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 HLA-DRAP01903 254 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 PDGFRBP09619 1106 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 KRT83P78385 493 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 C1orf220Q5T0J3 134 aa11.37□□□□□ -0.59
VPS11-208ENST00000621676 LMBR1Q8WVP7 490 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms