RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TRAIPQ9BWF2 469 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 GBP3Q9H0R5 595 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 C2orf40Q9H1Z8 148 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 CDT1Q9H211 546 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 TNMDQ9H2S6 317 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 ALG13Q9NP73 1137 aaKnown RBP14.83□□□□□ -0.04
LINC00540-202ENST00000616974 PANK4Q9NVE7 773 aa14.83□□□□□ -0.04
LINC00540-202ENST00000616974 A0A1W2PQ27 194 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 A0A1W2PQ64 194 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 A0A1W2PQD8 194 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 ZNF623O75123 536 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 NR1I2O75469 434 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 OFD1O75665 1012 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 PPP1R37O75864 691 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 DDHD2O94830 711 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 SLFN14P0C7P3 912 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 TMEM132AQ24JP5 1023 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 HERC4Q5GLZ8 1057 aaPredicted RBP14.82□□□□□ -0.04
LINC00540-202ENST00000616974 ZNF720Q7Z2F6 126 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 MRPL10Q7Z7H8 261 aaKnown RBP14.82□□□□□ -0.04
LINC00540-202ENST00000616974 ENGASEQ8NFI3 743 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 BCL7CQ8WUZ0 217 aaPredicted RBP14.82□□□□□ -0.04
LINC00540-202ENST00000616974 FAM84AQ96KN4 292 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 STRA6Q9BX79 667 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 LARSQ9P2J5 1176 aaKnown RBP14.82□□□□□ -0.04
LINC00540-202ENST00000616974 TBX20Q9UMR3 447 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 VWA8A3KMH1 1905 aa14.82□□□□□ -0.04
LINC00540-202ENST00000616974 PRPF6O94906 941 aaKnown RBP14.81□□□□□ -0.04
LINC00540-202ENST00000616974 ZNF202O95125 648 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 PROZP22891 400 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 TNFSF9P41273 254 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 SCNN1GP51170 649 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 GLRA4Q5JXX5 417 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 FMR1NBQ8N0W7 255 aaPredicted RBP14.81□□□□□ -0.04
LINC00540-202ENST00000616974 FIBCD1Q8N539 461 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 PRIMPOLQ96LW4 560 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 PAAF1Q9BRP4 392 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 TIPINQ9BVW5 301 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 TMEM134Q9H6X4 195 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 ELAC1Q9H777 363 aaKnown RBP14.81□□□□□ -0.04
LINC00540-202ENST00000616974 C17orf75Q9HAS0 396 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 TBC1D13Q9NVG8 400 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 SCN1AP35498 2009 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 ARL5CA6NH57 179 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 STAG3L1P0CL83 205 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 EFNA5P52803 228 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 ERVK-21P61565 698 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 EHHADHQ08426 723 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 CAMK1Q14012 370 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 THNSL1Q8IYQ7 743 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 CLP1Q92989 425 aaKnown RBP14.81□□□□□ -0.04
LINC00540-202ENST00000616974 TGS1Q96RS0 853 aaKnown RBP14.81□□□□□ -0.04
LINC00540-202ENST00000616974 MRPL44Q9H9J2 332 aaKnown RBP14.81□□□□□ -0.04
LINC00540-202ENST00000616974 RSAD1Q9HA92 442 aa14.81□□□□□ -0.04
LINC00540-202ENST00000616974 ZMYM2Q9UBW7 1377 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 RECQL4O94761 1208 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 ADSSP30520 456 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 CTNNB1P35222 781 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 GTF2BQ00403 316 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 PNOCQ13519 176 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 ZNF568Q3ZCX4 644 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 KRBA2Q6ZNG9 492 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 C7orf25Q9BPX7 421 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 TRIM6Q9C030 488 aaPredicted RBP14.8□□□□□ -0.04
LINC00540-202ENST00000616974 PTGESO14684 152 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 GRM6O15303 877 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 FAM189A1O60320 539 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 GCNT3O95395 438 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 EOMESO95936 686 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 AXLP30530 894 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 SMTNP53814 917 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 WNT7BP56706 349 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 SPAG1Q07617 926 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 CMTR2Q8IYT2 770 aaKnown RBP14.8□□□□□ -0.04
LINC00540-202ENST00000616974 MRPL4Q9BYD3 311 aaKnown RBP14.8□□□□□ -0.04
LINC00540-202ENST00000616974 TMEM117Q9H0C3 514 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 GOLGA2P5Q9HBQ8 144 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 SLC39A2Q9NP94 309 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 PARP2Q9UGN5 583 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 TNFSF13BQ9Y275 285 aa14.8□□□□□ -0.04
LINC00540-202ENST00000616974 HNRNPDLO14979 420 aaKnown RBP14.79□□□□□ -0.04
LINC00540-202ENST00000616974 ZC3H11AO75152 810 aaKnown RBP eCLIP14.79□□□□□ -0.04
LINC00540-202ENST00000616974 ITGB1P05556 798 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 ITGA4P13612 1032 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 STK4Q13043 487 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 SCARA3Q6AZY7 606 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 GPR153Q6NV75 609 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 MAP4K3Q8IVH8 894 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 KLHL23Q8NBE8 558 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 KIAA0895Q8NCT3 520 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 DOCK6Q96HP0 2047 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 ZMAT2Q96NC0 199 aaKnown RBP14.79□□□□□ -0.04
LINC00540-202ENST00000616974 NRDE2Q9H7Z3 1164 aa14.79□□□□□ -0.04
LINC00540-202ENST00000616974 PRPF40AO75400 957 aaKnown RBP14.78□□□□□ -0.04
LINC00540-202ENST00000616974 IGFBP4P22692 258 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 IRS1P35568 1242 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 CCDC85BQ15834 202 aaPredicted RBP14.78□□□□□ -0.04
LINC00540-202ENST00000616974 CEP57L1Q8IYX8 460 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 MICALL1Q8N3F8 863 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 PPM1EQ8WY54 764 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms