RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SMYD3Q9H7B4 428 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 HPSEQ9Y251 543 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 F5H423 210 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 SLC16A3O15427 465 aaKnown RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 RAD51CO43502 376 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 PLEKP08567 350 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 CD44P16070 742 aaKnown RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 RBM43Q6ZSC3 357 aaKnown RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 C16orf86Q6ZW13 317 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 ZNF710Q8N1W2 664 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 EXT2Q93063 718 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 CYP26B1Q9NR63 512 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 EIF3HO15372 352 aaKnown RBP eCLIP14.88□□□□□ -0.033e-8■■□□□ 12.8
CPSF1-212ENST00000616140 S100BP04271 92 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 CDH6P55285 790 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 FGD4Q96M96 766 aa14.88□□□□□ -0.03
CPSF1-212ENST00000616140 MRPL4Q9BYD3 311 aaKnown RBP14.88□□□□□ -0.03
CPSF1-212ENST00000616140 CFAP69A5D8W1 941 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 GNGT2O14610 69 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 PRR5LQ6MZQ0 368 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 KLHL11Q9NVR0 708 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 C1orf167Q5SNV9 1468 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 TCP11X1B4DZS4 312 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 TBX3O15119 743 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 MYBL1P10243 752 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 ACOT2P49753 483 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 CDR2Q01850 454 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 RSBN1LQ6PCB5 846 aaPredicted RBP14.87□□□□□ -0.03
CPSF1-212ENST00000616140 FAM217BQ9NTX9 383 aaPredicted RBP14.87□□□□□ -0.03
CPSF1-212ENST00000616140 DLC1Q96QB1 1528 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 TYW5A2RUC4 315 aaKnown RBP14.87□□□□□ -0.03
CPSF1-212ENST00000616140 ANXA13P27216 316 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 IRAK1P51617 712 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 NOP14P78316 857 aaKnown RBP14.87□□□□□ -0.03
CPSF1-212ENST00000616140 WDR72Q3MJ13 1102 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 HEATR6Q6AI08 1181 aaKnown RBP14.87□□□□□ -0.03
CPSF1-212ENST00000616140 RUBCNQ92622 972 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 BTBD6Q96KE9 485 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 EPN3Q9H201 632 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 JMJD4Q9H9V9 463 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 PARVAQ9NVD7 372 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 EHD2Q9NZN4 543 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 PIM2Q9P1W9 311 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 PRR12Q9ULL5 1215 aa14.87□□□□□ -0.03
CPSF1-212ENST00000616140 CCDC195A0A1B0GUA6 201 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 HUS1O60921 280 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 CDH16O75309 829 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 TOB1P50616 345 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 SEC24CP53992 1094 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ERVK-24P63145 666 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 C1orf146Q5VVC0 180 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ELOA2Q8IYF1 753 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ZIM3Q96PE6 472 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 UPF3AQ9H1J1 476 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ACAD9Q9H845 621 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ALG13Q9NP73 1137 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 WDR70Q9NW82 654 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 UVRAGQ9P2Y5 699 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 PHF20L1A8MW92 1017 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 LPXNO60711 386 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 RPA1P27694 616 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 KCNJ1P48048 391 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 HIF1AQ16665 826 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 KIAA1841Q6NSI8 718 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 KLC3Q6P597 504 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 SLC10A4Q96EP9 437 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 DHX35Q9H5Z1 703 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 NYAP2Q9P242 653 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 GOLGA8RI6L899 631 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 CREB3O43889 395 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 TNFAIP2Q03169 654 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 TWF2Q6IBS0 349 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 NUDCD3Q8IVD9 361 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 CCNYL1Q8N7R7 359 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ZNF526Q8TF50 670 aaPredicted RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 TTC1Q99614 292 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 CELF4Q9BZC1 486 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 THEGQ9P2T0 379 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ALG6Q9Y672 507 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 DUSP10Q9Y6W6 482 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 PFDN1O60925 122 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 LSP1P33241 339 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 HSPA9P38646 679 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 STAT4Q14765 748 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 RNF149Q8NC42 400 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 ZNF473Q8WTR7 871 aaKnown RBP14.86□□□□□ -0.03
CPSF1-212ENST00000616140 CPA5Q8WXQ8 436 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 CCDC138Q96M89 665 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 RBM15Q96T37 977 aaKnown RBP eCLIP14.86□□□□□ -0.037e-7■■□□□ 12.2
CPSF1-212ENST00000616140 FAM167BQ9BTA0 163 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 C2orf40Q9H1Z8 148 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 KLC4Q9NSK0 619 aa14.86□□□□□ -0.03
CPSF1-212ENST00000616140 A0A087X0T9 212 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 DIAPH2O60879 1101 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 FAM228BP0C875 321 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 KRT10P13645 584 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 EEF1B2P24534 225 aaKnown RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 SNRNP35Q16560 246 aaKnown RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 CDC42EP5Q6NZY7 148 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 PNKPQ96T60 521 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms