RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 GJB4Q9NTQ9 266 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 ZDHHC7Q9NXF8 308 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 DLGAP2Q9P1A6 1054 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 CA14Q9ULX7 337 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 GIT1Q9Y2X7 761 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 EP300Q09472 2414 aaPredicted RBP11.11□□□□□ -0.63
LIG1-209ENST00000596104 CACNA1AO00555 2505 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 DMDP11532 3685 aa11.11□□□□□ -0.63
LIG1-209ENST00000596104 TGM5O43548 720 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 REC8O95072 547 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 LAMP2P13473 410 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 ARF4P18085 180 aaPredicted RBP11.1□□□□□ -0.63
LIG1-209ENST00000596104 CYP4A11Q02928 519 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 MBTD1Q05BQ5 628 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 HTR4Q13639 388 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 CAPSQ13938 189 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 CTTNQ14247 550 aaKnown RBP11.1□□□□□ -0.63
LIG1-209ENST00000596104 MXD4Q14582 209 aaPredicted RBP11.1□□□□□ -0.63
LIG1-209ENST00000596104 EARS2Q5JPH6 523 aaKnown RBP11.1□□□□□ -0.63
LIG1-209ENST00000596104 NCAPH2Q6IBW4 605 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 FUT10Q6P4F1 479 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 CPLX2Q6PUV4 134 aaKnown RBP11.1□□□□□ -0.63
LIG1-209ENST00000596104 PALB2Q86YC2 1186 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 POTEDQ86YR6 584 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 OXER1Q8TDS5 423 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 GPR152Q8TDT2 470 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 ASAP3Q8TDY4 903 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 COLEC11Q9BWP8 271 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 PRKD2Q9BZL6 878 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 TM6SF1Q9BZW5 370 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 SLC2A4RGQ9NR83 387 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIG1-209ENST00000596104 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIG1-209ENST00000596104 FNIP2Q9P278 1114 aa11.1□□□□□ -0.63
LIG1-209ENST00000596104 DCHS1Q96JQ0 3298 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 ZMYM2Q9UBW7 1377 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 INO80B-WBP1J3KQ70 363 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 STK25O00506 426 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 B4GALT5O43286 388 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 EPB41L2O43491 1005 aaKnown RBP11.09□□□□□ -0.63
LIG1-209ENST00000596104 CCNT1O60563 726 aaKnown RBP11.09□□□□□ -0.63
LIG1-209ENST00000596104 NR1I2O75469 434 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 ZMYND10O75800 440 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 SLITRK3O94933 977 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 LYPLA2O95372 231 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 LMNAP02545 664 aaKnown RBP11.09□□□□□ -0.63
LIG1-209ENST00000596104 RPL17P18621 184 aaKnown RBP11.09□□□□□ -0.63
LIG1-209ENST00000596104 AKAP5P24588 427 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 ARL2P36404 184 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 STK3Q13188 491 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 USP41Q3LFD5 358 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 PIK3AP1Q6ZUJ8 805 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 GET4Q7L5D6 327 aaPredicted RBP11.09□□□□□ -0.63
LIG1-209ENST00000596104 RIN2Q8WYP3 895 aaPredicted RBP11.09□□□□□ -0.63
LIG1-209ENST00000596104 HSD17B14Q9BPX1 270 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 APOL6Q9BWW8 343 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 NFKBIZQ9BYH8 718 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 PIDD1Q9HB75 910 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 ARHGEF3Q9NR81 526 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 ADAM28Q9UKQ2 775 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 CYP46A1Q9Y6A2 500 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 NUMBLQ9Y6R0 609 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 R4GN57 208 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 STK36Q9NRP7 1315 aa11.09□□□□□ -0.63
LIG1-209ENST00000596104 FAM205CA6NFA0 338 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 DTNBO60941 627 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 DCNP07585 359 aaKnown RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 GLULP15104 373 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 GLRA2P23416 452 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 NCBP1Q09161 790 aaKnown RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 SCRN1Q12765 414 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 GRIK3Q13003 919 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 TFDP1Q14186 410 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 CDR2LQ86X02 465 aaPredicted RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 GLYCTKQ8IVS8 523 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 TPH2Q8IWU9 490 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 SLFN12Q8IYM2 578 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 HACE1Q8IYU2 909 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 ST13P5Q8NFI4 369 aaPredicted RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 RABGGTAQ92696 567 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 RMDN1Q96DB5 314 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 NAP1L4Q99733 375 aaKnown RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 EIF2AK1Q9BQI3 630 aaKnown RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 PAAF1Q9BRP4 392 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 RPP25Q9BUL9 199 aaKnown RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 TRIM6Q9C030 488 aaPredicted RBP11.08□□□□□ -0.64
LIG1-209ENST00000596104 ANKEF1Q9NU02 776 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 CACNG4Q9UBN1 327 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 SIT1Q9Y3P8 196 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 ZNF292O60281 2723 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 C2orf16Q68DN1 1984 aa11.08□□□□□ -0.64
LIG1-209ENST00000596104 A0A1B0GUA9 196 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 POTEMA6NI47 508 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 MARCH6O60337 910 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 DGAT1O75907 488 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 NPTXRO95502 500 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 SP9P0CG40 484 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 RFX1P22670 979 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 RARRES1P49788 294 aa11.07□□□□□ -0.64
LIG1-209ENST00000596104 STARD6P59095 220 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms