RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 COLGALT2Q8IYK4 626 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 RPS6KC1Q96S38 1066 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 PLIN2Q99541 437 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 POP1Q99575 1024 aaKnown RBP16.83■□□□□ 0.28
TRIM28-203ENST00000593582 C17orf75Q9HAS0 396 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 CD320Q9NPF0 282 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 ZMYM2Q9UBW7 1377 aa16.83■□□□□ 0.28
TRIM28-203ENST00000593582 PHLPP2Q6ZVD8 1323 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 SYT1P21579 422 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 GUCY2CP25092 1073 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 DSC1Q08554 894 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 KCNC3Q14003 757 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 SF3A1Q15459 793 aaKnown RBP16.82■□□□□ 0.28
TRIM28-203ENST00000593582 APBB1IPQ7Z5R6 666 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-203ENST00000593582 DAW1Q8N136 415 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 SYT2Q8N9I0 419 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-203ENST00000593582 AUTS2Q8WXX7 1259 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 CALML4Q96GE6 196 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 PNMA5Q96PV4 448 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 KMT5AQ9NQR1 393 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 MIOSQ9NXC5 875 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 KCND2Q9NZV8 630 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 KLK14Q9P0G3 267 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 KCNG1Q9UIX4 513 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 USP20Q9Y2K6 914 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 PRG3Q9Y2Y8 225 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-203ENST00000593582 RBM19Q9Y4C8 960 aaKnown RBP16.82■□□□□ 0.28
TRIM28-203ENST00000593582 IRAK3Q9Y616 596 aa16.82■□□□□ 0.28
TRIM28-203ENST00000593582 PLA2G4BP0C869 781 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 HOXB8P17481 243 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-203ENST00000593582 LONP1P36776 959 aaKnown RBP16.81■□□□□ 0.28
TRIM28-203ENST00000593582 SLC12A3P55017 1021 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 RAD51AP2Q09MP3 1159 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 GRIK3Q13003 919 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 DCAF4L1Q3SXM0 396 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 TMEM119Q4V9L6 283 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 ATF7IP2Q5U623 682 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 ANKRD54Q6NXT1 300 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 GSTCDQ8NEC7 633 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 CASP10Q92851 521 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 VN1R3Q9BXE9 311 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 C1QTNF1Q9BXJ1 281 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 SNTG2Q9NY99 539 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 USP15Q9Y4E8 981 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-203ENST00000593582 GTF3C3Q9Y5Q9 886 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 HCFC2Q9Y5Z7 792 aa16.81■□□□□ 0.28
TRIM28-203ENST00000593582 CLASP2O75122 1294 aaKnown RBP16.8■□□□□ 0.28
TRIM28-203ENST00000593582 EDN1P05305 212 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 MAPK7Q13164 816 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 PTPN14Q15678 1187 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 NT5DC1Q5TFE4 455 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 RASSF8Q8NHQ8 419 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 COLEC11Q9BWP8 271 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 EMILIN2Q9BXX0 1053 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 MRPL4Q9BYD3 311 aaKnown RBP16.8■□□□□ 0.28
TRIM28-203ENST00000593582 TMEM134Q9H6X4 195 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 FOXD4L1Q9NU39 408 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 MARCH5Q9NX47 278 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 ARHGAP28Q9P2N2 729 aa16.8■□□□□ 0.28
TRIM28-203ENST00000593582 C19orf67A6NJJ6 358 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 SFI1A8K8P3 1242 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 RECQL4O94761 1208 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 SOD2P04179 222 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 PLS3P13797 630 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 SMTNP53814 917 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 RESTQ13127 1097 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 TPRNQ4KMQ1 711 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 EEF1DP3Q658K8 133 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 SPIRE2Q8WWL2 714 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 NTPCRQ9BSD7 190 aaKnown RBP16.79■□□□□ 0.28
TRIM28-203ENST00000593582 EPHX3Q9H6B9 360 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 MRPL17Q9NRX2 175 aaKnown RBP16.79■□□□□ 0.28
TRIM28-203ENST00000593582 TNFSF13BQ9Y275 285 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 SSX2IPQ9Y2D8 614 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 GDAQ9Y2T3 454 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 CLIC4Q9Y696 253 aa16.79■□□□□ 0.28
TRIM28-203ENST00000593582 SLC16A4O15374 487 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 URODP06132 367 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 THP07101 528 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 SYCE2Q6PIF2 218 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 PPFIBP1Q86W92 1011 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 SUSD6Q92537 303 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 KHSRPQ92945 711 aaKnown RBP eCLIP16.78■□□□□ 0.28
TRIM28-203ENST00000593582 SNX21Q969T3 373 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 ACO2Q99798 780 aaKnown RBP16.78■□□□□ 0.28
TRIM28-203ENST00000593582 S1PR5Q9H228 398 aa16.78■□□□□ 0.28
TRIM28-203ENST00000593582 PI4K2BG5E9Z4 385 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 C2CD2LO14523 706 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 STX6O43752 255 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 ALADP13716 330 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 PLCG1P19174 1290 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 KLRC2P26717 231 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 GRIN1Q05586 938 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 STRN3Q13033 797 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 TUSC3Q13454 348 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 CBX2Q14781 532 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-203ENST00000593582 KARSQ15046 597 aaKnown RBP16.77■□□□□ 0.28
TRIM28-203ENST00000593582 ZNF568Q3ZCX4 644 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 KIAA1841Q6NSI8 718 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 CES5AQ6NT32 575 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms