RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	SLC41A1	Q8IVJ1	513 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	BBC3	Q96PG8	261 aa	Predicted RBP	4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	WNT8A	Q9H1J5	351 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	SERHL2	Q9H4I8	314 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	RIOX1	Q9H6W3	641 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	ZSWIM4	Q9H7M6	989 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	AKIP1	Q9NQ31	210 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	SYBU	Q9NX95	663 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	TRPM5	Q9NZQ8	1165 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	ZNHIT2	Q9UHR6	403 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	HDAC5	Q9UQL6	1122 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	CD2AP	Q9Y5K6	639 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	PPP2R3B	Q9Y5P8	575 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	NUMBL	Q9Y6R0	609 aa		4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	POLA1	P09884	1462 aa	Predicted RBP	4.21	□□□□□ -1.74
VAPA-208	ENST00000584796	GAPVD1	Q14C86	1478 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	LCHN	A4D1U4	455 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	PRR5-ARHGAP8	B1AHC4	643 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	DIRC3	C9JPN6	131 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	NCR1	O76036	304 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	XPA	P23025	273 aa	Predicted RBP	4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	BMPR1A	P36894	532 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	MEF2A	Q02078	507 aa	Predicted RBP	4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	MGAT5	Q09328	741 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	HNRNPA0	Q13151	305 aa	Known RBP	4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	UBE3C	Q15386	1083 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	TERF2	Q15554	542 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	PLXDC1	Q8IUK5	500 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	SYT12	Q8IV01	421 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	GLB1L2	Q8IW92	636 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	RSAD2	Q8WXG1	361 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	NINJ1	Q92982	152 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	MS4A5	Q9H3V2	200 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	CYP4F11	Q9HBI6	524 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	PTGFRN	Q9P2B2	879 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	EVL	Q9UI08	416 aa	Predicted RBP	4.2	□□□□□ -1.74
VAPA-208	ENST00000584796	PRSS50	Q9UI38	385 aa		4.2	□□□□□ -1.74
VAPA-208	ENST00000584796		B5MCH6	92 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	TMEM127	O75204	238 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	LTA4H	P09960	611 aa	Known RBP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	HSP90B1	P14625	803 aa	Known RBP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	TYRP1	P17643	537 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	LSP1	P33241	339 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	IL12RB1	P42701	662 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	LSS	P48449	732 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	CLK3	P49761	638 aa	Known RBP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	MANF	P55145	182 aa	Known RBP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	OCRL	Q01968	901 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	PPARA	Q07869	468 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	SEPT7	Q16181	437 aa	Known RBP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	TKFC	Q3LXA3	575 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	C19orf54	Q5BKX5	351 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	CCDC62	Q6P9F0	684 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	ADGRG3	Q86Y34	549 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	LINC00476	Q8WZB0	136 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	RNPC3	Q96LT9	517 aa	Known RBP	4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	COQ10A	Q96MF6	247 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	WDR11	Q9BZH6	1224 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	SPTLC3	Q9NUV7	552 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	ANKFY1	Q9P2R3	1169 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	SYNJ1	O43426	1573 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	HECW2	Q9P2P5	1572 aa		4.19	□□□□□ -1.74
VAPA-208	ENST00000584796	MARCH11	A6NNE9	402 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	USP14	P54578	494 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	RNASE9	P60153	205 aa	Known RBP	4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	APBA1	Q02410	837 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	NHLH2	Q02577	135 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	TRIM25	Q14258	630 aa	Known RBP	4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	CCDC144B	Q3MJ40	725 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	ANKS6	Q68DC2	871 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	FRMD7	Q6ZUT3	714 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	C16orf86	Q6ZW13	317 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	HOMER1	Q86YM7	354 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	PPM1K	Q8N3J5	372 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	OR10H5	Q8NGA6	315 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	GPR101	Q96P66	508 aa	Predicted RBP	4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	PRDM13	Q9H4Q3	707 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	EPN1	Q9Y6I3	576 aa	Predicted RBP	4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	PPRC1	Q5VV67	1664 aa	Known RBP	4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	CEP170	Q5SW79	1584 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	CCDC88B	A6NC98	1476 aa		4.18	□□□□□ -1.74
VAPA-208	ENST00000584796	ZMYM3	Q14202	1370 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	TDRD9	Q8NDG6	1382 aa	Known RBP	4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	PIPSL	A2A3N6	862 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	KIAA0355	O15063	1070 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	ZNF185	O15231	689 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	NDUFA10	O95299	355 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	MGAT1	P26572	445 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	ADCYAP1R1	P41586	468 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	AVPR1B	P47901	424 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	SCNN1B	P51168	640 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	C21orf58	P58505	322 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	MRPS21	P82921	87 aa	Known RBP	4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	C21orf62-AS1	Q17RA5	79 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	PDCD4	Q53EL6	469 aa	Known RBP	4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	COLEC12	Q5KU26	742 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	STRIP1	Q5VSL9	837 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	LRCH2	Q5VUJ6	765 aa		4.17	□□□□□ -1.74
VAPA-208	ENST00000584796	CNNM4	Q6P4Q7	775 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms