RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 A0A1W2PQD8 194 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 B4DLN1 442 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 DYRK3O43781 588 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 KINO60870 393 aaKnown RBP11.5□□□□□ -0.57
SS18-221ENST00000582448 KCNA5P22460 613 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 MRPL12P52815 198 aaKnown RBP11.5□□□□□ -0.57
SS18-221ENST00000582448 NAPAP54920 295 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 SLC39A14Q15043 492 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 CNKSR3Q6P9H4 555 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 BTNL9Q6UXG8 535 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 LRRC8DQ7L1W4 858 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 MAP4K3Q8IVH8 894 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 LINC00301Q8NCQ3 95 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 CAGE1Q8TC20 777 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 AFAP1L1Q8TED9 768 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 MEGF10Q96KG7 1140 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 TGS1Q96RS0 853 aaKnown RBP11.5□□□□□ -0.57
SS18-221ENST00000582448 RAD9AQ99638 391 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 NUP62CLQ9H1M0 184 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 UBE2ZQ9H832 354 aaPredicted RBP11.5□□□□□ -0.57
SS18-221ENST00000582448 LATS2Q9NRM7 1088 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 BARHL2Q9NY43 387 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 KCNK4Q9NYG8 393 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 LMCD1Q9NZU5 365 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 CLIC4Q9Y696 253 aa11.5□□□□□ -0.57
SS18-221ENST00000582448 REV3LO60673 3130 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 LOC102724159A0A0B4J2E5 919 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 CCDC194A0A1B0GVG4 234 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 SYCE3A1L190 88 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 PDE2AO00408 941 aaPredicted RBP11.49□□□□□ -0.57
SS18-221ENST00000582448 NBNO60934 754 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 PPP6R2O75170 966 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 GH1P01241 217 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 SNHG28P0DPA3 235 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 CKBP12277 381 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 IL9P15248 144 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 TRAPPC10P48553 1259 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 ZNF543Q08ER8 600 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 TRAF1Q13077 416 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 IKBKEQ14164 716 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 GPNMBQ14956 572 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 PWP2Q15269 919 aaKnown RBP11.49□□□□□ -0.57
SS18-221ENST00000582448 TCTN1Q2MV58 587 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 ADALQ6DHV7 355 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 LRSAM1Q6UWE0 723 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 HOMER1Q86YM7 354 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 BLIDQ8IZY5 108 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 C7orf31Q8N865 590 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 DNERQ8NFT8 737 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 MRPS27Q92552 414 aaKnown RBP11.49□□□□□ -0.57
SS18-221ENST00000582448 TBC1D5Q92609 795 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 DHX38Q92620 1227 aaKnown RBP11.49□□□□□ -0.57
SS18-221ENST00000582448 OSMRQ99650 979 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 UBA5Q9GZZ9 404 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 TNMDQ9H2S6 317 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 VAT1LQ9HCJ6 419 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 HDAC6Q9UBN7 1215 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 PCDHA4Q9UN74 947 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 NCOR1O75376 2440 aa11.49□□□□□ -0.57
SS18-221ENST00000582448 LINC01553A4QN01 128 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 F8W735 103 aaPredicted RBP11.48□□□□□ -0.57
SS18-221ENST00000582448 SORBS3O60504 671 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 CUTAO60888 179 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 GJB5O95377 273 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 WISP1O95388 367 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 MMP3P08254 477 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 EDNRBP24530 442 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 ERVK-21P61565 698 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 FAM160A1Q05DH4 1040 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 PDE4CQ08493 712 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 FSIP1Q8NA03 581 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 DAGLBQ8NCG7 672 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.48□□□□□ -0.57
SS18-221ENST00000582448 TP53INP1Q96A56 240 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 TAAR1Q96RJ0 339 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 MRPL18Q9H0U6 180 aaKnown RBP11.48□□□□□ -0.57
SS18-221ENST00000582448 GLT8D2Q9H1C3 349 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 CPVLQ9H3G5 476 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 TSPY26PQ9H489 355 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 RIOX1Q9H6W3 641 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 PCDHA7Q9UN72 937 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 LRRC37A2A6NM11 1700 aa11.48□□□□□ -0.57
SS18-221ENST00000582448 TET1Q8NFU7 2136 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.47□□□□□ -0.57
SS18-221ENST00000582448 PNMA6FA0A0J9YX94 578 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 ABHD14A-ACY1A0A1B0GW23 586 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 FSCN2O14926 492 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 ATP2B1P20020 1258 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 ZNF200P98182 395 aaPredicted RBP11.47□□□□□ -0.57
SS18-221ENST00000582448 ZRSR1Q15695 479 aaKnown RBP11.47□□□□□ -0.57
SS18-221ENST00000582448 DGKDQ16760 1214 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 LEXMQ3ZCV2 418 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 ZNF618Q5T7W0 954 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 PEAR1Q5VY43 1037 aaPredicted RBP11.47□□□□□ -0.57
SS18-221ENST00000582448 WWC2Q6AWC2 1192 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.47□□□□□ -0.57
SS18-221ENST00000582448 FAM178BQ8IXR5 827 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 MYOCDQ8IZQ8 938 aa11.47□□□□□ -0.57
SS18-221ENST00000582448 TMEM102Q8N9M5 508 aaPredicted RBP11.47□□□□□ -0.57
SS18-221ENST00000582448 KAT2BQ92831 832 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms