RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 AKT3Q9Y243 479 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 Q9Y3F1 56 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 FHOD1Q9Y613 1164 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 MYH10P35580 1976 aa11.44□□□□□ -0.58
SS18-217ENST00000580958 RRN3P2A6NIE6 340 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 LRRIQ3A6PVS8 624 aaPredicted RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 KIAA0391O15091 583 aaKnown RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 MSCO60682 206 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 SMIM10L2AP0DMW4 78 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 SMIM10L2BP0DMW5 78 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 HARSP12081 509 aaKnown RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 TMOD1P28289 359 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 HNRNPH3P31942 346 aaKnown RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 PHKA2P46019 1235 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 GCLMP48507 274 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 MCCD1P59942 119 aaPredicted RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 CDK17Q00537 523 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 MBTD1Q05BQ5 628 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 FSCN1Q16658 493 aaKnown RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 MAPK6Q16659 721 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 MARCH8Q5T0T0 291 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 SFMBT2Q5VUG0 894 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 IQCEQ6IPM2 695 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 GJB7Q6PEY0 223 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 ZPBP2Q6X784 338 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 CD99L2Q8TCZ2 262 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 TMC2Q8TDI7 906 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 PARD3BQ8TEW8 1205 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 LMBR1Q8WVP7 490 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 CCDC127Q96BQ5 260 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 MAP7D2Q96T17 732 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 ACO2Q99798 780 aaKnown RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 MSTO1Q9BUK6 570 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 TOPORSQ9NS56 1045 aaPredicted RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 SETD4Q9NVD3 440 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 ADGRG1Q9Y653 693 aa11.43□□□□□ -0.58
SS18-217ENST00000580958 EPN1Q9Y6I3 576 aaPredicted RBP11.43□□□□□ -0.58
SS18-217ENST00000580958 RALGAPA2Q2PPJ7 1873 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 A0A087WZ62 844 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 A0A0B4J269 797 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 MYADML2A6NDP7 307 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 ZNF233A6NK53 670 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 INO80B-WBP1J3KQ70 363 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 HAS3O00219 553 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 P4HA2O15460 535 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 DUSP11O75319 330 aaKnown RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 VTNP04004 478 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 PLEKP08567 350 aaPredicted RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 CCDC175P0C221 793 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 TNNT1P13805 278 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 UCHL3P15374 230 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 ACOT2P49753 483 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 VEGFBP49765 207 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 MXI1P50539 228 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 RAPGEF1Q13905 1077 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 PTPN14Q15678 1187 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 ASIC2Q16515 512 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 EPC2Q52LR7 807 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 ZBTB41Q5SVQ8 909 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 TRIM65Q6PJ69 517 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 NYAP1Q6ZVC0 841 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 ZBTB33Q86T24 672 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 EHBP1Q8NDI1 1231 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 MARVELD3Q96A59 401 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 POP1Q99575 1024 aaKnown RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 FDXACB1Q9BRP7 624 aaPredicted RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 CFHR5Q9BXR6 569 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 INO80BQ9C086 356 aaPredicted RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 TMEM117Q9H0C3 514 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 NUCKS1Q9H1E3 243 aaKnown RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 FZD8Q9H461 694 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 MINDY3Q9H8M7 445 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 NHEJ1Q9H9Q4 299 aaPredicted RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 KIAA1586Q9HCI6 787 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 PLAGL2Q9UPG8 496 aa11.42□□□□□ -0.58
SS18-217ENST00000580958 PDCD11Q14690 1871 aaKnown RBP11.42□□□□□ -0.58
SS18-217ENST00000580958 A0A0U1RQJ8 604 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 ACKR2O00590 384 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 ABLIM1O14639 778 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 B4GALT5O43286 388 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 TOM1L1O75674 476 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 NDUFA10O95299 355 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 LDHAP00338 332 aaKnown RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 DLATP10515 647 aaKnown RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 ELNP15502 786 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 CYLC1P35663 651 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 MAP2K2P36507 400 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 EIF4A3P38919 411 aaKnown RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 GJA9P57773 515 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 HTRA3P83110 453 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 MAP2K1Q02750 393 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 POU5F1BQ06416 359 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 ENPEPQ07075 957 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 CACNB2Q08289 660 aaPredicted RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 PRPF4BQ13523 1007 aaKnown RBP11.41□□□□□ -0.58
SS18-217ENST00000580958 PSMD6Q15008 389 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 TMEM132AQ24JP5 1023 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 EEF1DP3Q658K8 133 aa11.41□□□□□ -0.58
SS18-217ENST00000580958 NFRKBQ6P4R8 1299 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms