RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LRRC26Q2I0M4 334 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 SARM1Q6SZW1 724 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 FAM186BQ8IYM0 893 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 ZBTB45Q96K62 511 aaPredicted RBP11.72□□□□□ -0.53
SS18-213ENST00000579640 NOC4LQ9BVI4 516 aaKnown RBP11.72□□□□□ -0.53
SS18-213ENST00000579640 LIMA1Q9UHB6 759 aaKnown RBP11.72□□□□□ -0.53
SS18-213ENST00000579640 ST3GAL5Q9UNP4 418 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 USP20Q9Y2K6 914 aa11.72□□□□□ -0.53
SS18-213ENST00000579640 LRRC10BA6NIK2 292 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 OGTO15294 1046 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 ATP1A3P13637 1013 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 PRKCSHP14314 528 aaPredicted RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 FGFR4P22455 802 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 HOXA11P31270 313 aaPredicted RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 MTIF2P46199 727 aaKnown RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 POU5F1Q01860 360 aaKnown RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 PPP2R3AQ06190 1150 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 LPIN1Q14693 890 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 COL13A1Q5TAT6 717 aaPredicted RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 EEF1DP3Q658K8 133 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 SLC27A1Q6PCB7 646 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 INTS8Q75QN2 995 aaKnown RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 USP37Q86T82 979 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 TNS4Q8IZW8 715 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 EEF2KMTQ96G04 330 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 CPB2Q96IY4 423 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 CDT1Q9H211 546 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 HIPK3Q9H422 1215 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 ERVK-5Q9HDB9 667 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 ARMCX3Q9UH62 379 aaPredicted RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 TBX21Q9UL17 535 aa11.71□□□□□ -0.54
SS18-213ENST00000579640 PIN4Q9Y237 131 aaKnown RBP11.71□□□□□ -0.54
SS18-213ENST00000579640 ZNF233A6NK53 670 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 SERPINC1P01008 464 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 GHRP10912 638 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 KRT13P13646 458 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 CASP4P49662 377 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 FANCCQ00597 558 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 NFX1Q12986 1120 aaKnown RBP11.7□□□□□ -0.54
SS18-213ENST00000579640 KRT31Q15323 416 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 SNRNP35Q16560 246 aaKnown RBP11.7□□□□□ -0.54
SS18-213ENST00000579640 HSP90AA4PQ58FG1 418 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 ZBTB33Q86T24 672 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 CREBRFQ8IUR6 639 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 SAAL1Q96ER3 474 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 HAPLN2Q9GZV7 340 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 AGO3Q9H9G7 860 aaKnown RBP11.7□□□□□ -0.54
SS18-213ENST00000579640 TMEM39AQ9NV64 488 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 PADI3Q9ULW8 664 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 TANC1Q9C0D5 1861 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 CBFA2T2O43439 604 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 TPM3P06753 285 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 ZSCAN20P17040 1043 aaPredicted RBP11.7□□□□□ -0.54
SS18-213ENST00000579640 CD52P31358 61 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 MCCD1P59942 119 aaPredicted RBP11.7□□□□□ -0.54
SS18-213ENST00000579640 MAN2A1Q16706 1144 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 FILIP1LQ4L180 1135 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 TRIM59Q8IWR1 403 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 BORCS6Q96GS4 357 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 MFSD14AQ96MC6 490 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 FAM213AQ9BRX8 229 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 TUBGCP2Q9BSJ2 902 aa11.7□□□□□ -0.54
SS18-213ENST00000579640 GOLGA8IPA6NC78 632 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 GOLGA8JA6NMD2 632 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 FAM189A1O60320 539 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 CLTAP09496 248 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 HARSP12081 509 aaKnown RBP11.69□□□□□ -0.54
SS18-213ENST00000579640 RFC2P35250 354 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 COPB1P53618 953 aaKnown RBP11.69□□□□□ -0.54
SS18-213ENST00000579640 UBASH3AP57075 661 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 PLCB2Q00722 1185 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 BFSP1Q12934 665 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 MBTPS1Q14703 1052 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 SURF1Q15526 300 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 TWF2Q6IBS0 349 aaKnown RBP11.69□□□□□ -0.54
SS18-213ENST00000579640 CDR2LQ86X02 465 aaPredicted RBP11.69□□□□□ -0.54
SS18-213ENST00000579640 CBWD2Q8IUF1 395 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 BRSK2Q8IWQ3 736 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 RDH13Q8NBN7 331 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 TMC2Q8TDI7 906 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 APBB2Q92870 758 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 ABHD8Q96I13 439 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 TRAIPQ9BWF2 469 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 FTHL17Q9BXU8 183 aa11.69□□□□□ -0.54
SS18-213ENST00000579640 TRIM6Q9C030 488 aaPredicted RBP11.69□□□□□ -0.54
SS18-213ENST00000579640 CPSF3Q9UKF6 684 aaKnown RBP11.69□□□□□ -0.54
SS18-213ENST00000579640 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.69□□□□□ -0.54
SS18-213ENST00000579640 KIAA0355O15063 1070 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 STX10O60499 249 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 NPTXRO95502 500 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 ADRB2P07550 413 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 GRM5P41594 1212 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 ACOT2P49753 483 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 RAB27AP51159 221 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 CYP24A1Q07973 514 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 DSC3Q14574 896 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 CRELD2Q6UXH1 353 aaPredicted RBP11.68□□□□□ -0.54
SS18-213ENST00000579640 APTXQ7Z2E3 356 aaKnown RBP11.68□□□□□ -0.54
SS18-213ENST00000579640 HACE1Q8IYU2 909 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 ANP32BQ92688 251 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms