RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 KLK14Q9P0G3 267 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 ARHGAP28Q9P2N2 729 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 FBXO2Q9UK22 296 aaPredicted RBP26.31■■□□□ 1.8
SHMT1-206ENST00000579558 FAN1Q9Y2M0 1017 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 RBM19Q9Y4C8 960 aaKnown RBP26.31■■□□□ 1.8
SHMT1-206ENST00000579558 MYH11P35749 1972 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 ZMYM2Q9UBW7 1377 aa26.31■■□□□ 1.8
SHMT1-206ENST00000579558 FSD2A1L4K1 749 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 GRXCR2A6NFK2 248 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 HIDE1A8MVS5 230 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 IL9P15248 144 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 CA8P35219 290 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 DHX8Q14562 1220 aaKnown RBP26.3■■□□□ 1.8
SHMT1-206ENST00000579558 ATF7IP2Q5U623 682 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 RPS6KC1Q96S38 1066 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 CCSER1Q9C0I3 900 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 TMEM134Q9H6X4 195 aa26.3■■□□□ 1.8
SHMT1-206ENST00000579558 SRPRBQ9Y5M8 271 aaKnown RBP26.3■■□□□ 1.8
SHMT1-206ENST00000579558 NPHP3-ACAD11A0A0J9YXS1 232 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 NRP1O14786 923 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 SLC16A4O15374 487 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 GLP2RO95838 553 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 PLS3P13797 630 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 CACNB1Q02641 598 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-206ENST00000579558 DCAF4L1Q3SXM0 396 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 SPECC1Q5M775 1068 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 GPBP1Q86WP2 473 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 COLGALT2Q8IYK4 626 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 LRRC15Q8TF66 581 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 EPSTI1Q96J88 318 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 ZBP1Q9H171 429 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 BLOC1S4Q9NUP1 217 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 SNTG2Q9NY99 539 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 CD207Q9UJ71 328 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 FAM50BQ9Y247 325 aa26.29■■□□□ 1.8
SHMT1-206ENST00000579558 OR1G1P47890 313 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 DSC1Q08554 894 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 MCM6Q14566 821 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 ARSHQ5FYA8 562 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 APBB1IPQ7Z5R6 666 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-206ENST00000579558 MRPL43Q8N983 215 aaKnown RBP26.28■■□□□ 1.8
SHMT1-206ENST00000579558 GSTCDQ8NEC7 633 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 SPIRE2Q8WWL2 714 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 RAD54LQ92698 747 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 MRPL4Q9BYD3 311 aaKnown RBP26.28■■□□□ 1.8
SHMT1-206ENST00000579558 KCNG1Q9UIX4 513 aa26.28■■□□□ 1.8
SHMT1-206ENST00000579558 BARX2Q9UMQ3 279 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-206ENST00000579558 PRG3Q9Y2Y8 225 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-206ENST00000579558 MYH15Q9Y2K3 1946 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 C2orf71A6NGG8 1288 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 RECQL4O94761 1208 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 CXCL14O95715 111 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 SMTNP53814 917 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 GRIK3Q13003 919 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 USP49Q70CQ1 688 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 TAS1R3Q7RTX0 852 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 CLIC6Q96NY7 704 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 NTPCRQ9BSD7 190 aaKnown RBP26.27■■□□□ 1.8
SHMT1-206ENST00000579558 CLEC1BQ9P126 229 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 DAXXQ9UER7 740 aaPredicted RBP26.27■■□□□ 1.8
SHMT1-206ENST00000579558 TNFSF13BQ9Y275 285 aa26.27■■□□□ 1.8
SHMT1-206ENST00000579558 NR1I2O75469 434 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 CTSAP10619 480 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 RBM10P98175 930 aaKnown RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 SLC39A14Q15043 492 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 FOXD4L5Q5VV16 416 aaPredicted RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 VN1R2Q8NFZ6 395 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 FOXD4L4Q8WXT5 416 aaPredicted RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 AUTS2Q8WXX7 1259 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 LARP4BQ92615 738 aaKnown RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 MSLNLQ96KJ4 702 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 ACO2Q99798 780 aaKnown RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 REEP2Q9BRK0 252 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 VN1R3Q9BXE9 311 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 MARCH5Q9NX47 278 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 LARSQ9P2J5 1176 aaKnown RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 STK39Q9UEW8 545 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 CCDC39Q9UFE4 941 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 ODF2LQ9ULJ1 636 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 GDAQ9Y2T3 454 aa26.26■■□□□ 1.79
SHMT1-206ENST00000579558 MORC2Q9Y6X9 1032 aaPredicted RBP26.26■■□□□ 1.79
SHMT1-206ENST00000579558 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP26.25■■□□□ 1.79
SHMT1-206ENST00000579558 MBTPS2O43462 519 aa26.25■■□□□ 1.79
SHMT1-206ENST00000579558 SRGAP2BP0DMP2 458 aa26.25■■□□□ 1.79
SHMT1-206ENST00000579558 TXLNAP40222 546 aa26.25■■□□□ 1.79
SHMT1-206ENST00000579558 STRN3Q13033 797 aa26.25■■□□□ 1.79
SHMT1-206ENST00000579558 SMAD4Q13485 552 aaKnown RBP26.25■■□□□ 1.79
SHMT1-206ENST00000579558 SPRYD3Q8NCJ5 442 aa26.25■■□□□ 1.79
SHMT1-206ENST00000579558 TMEM161BQ8NDZ6 487 aa26.25■■□□□ 1.79
SHMT1-206ENST00000579558 TARS2Q9BW92 718 aaKnown RBP26.25■■□□□ 1.79
SHMT1-206ENST00000579558 KRT18P05783 430 aaKnown RBP26.24■■□□□ 1.79
SHMT1-206ENST00000579558 PDIA4P13667 645 aaKnown RBP26.24■■□□□ 1.79
SHMT1-206ENST00000579558 NASPP49321 788 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-206ENST00000579558 GIT2Q14161 759 aa26.24■■□□□ 1.79
SHMT1-206ENST00000579558 STK38Q15208 465 aa26.24■■□□□ 1.79
SHMT1-206ENST00000579558 ZNF568Q3ZCX4 644 aa26.24■■□□□ 1.79
SHMT1-206ENST00000579558 LLGL2Q6P1M3 1020 aa26.24■■□□□ 1.79
SHMT1-206ENST00000579558 FAM178BQ8IXR5 827 aa26.24■■□□□ 1.79
SHMT1-206ENST00000579558 KRI1Q8N9T8 703 aaKnown RBP26.24■■□□□ 1.79
SHMT1-206ENST00000579558 TMEM87AQ8NBN3 555 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms