RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CBX4O00257 560 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 TUSC2O75896 110 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 BAG2O95816 211 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 ADH1BP00325 375 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 CYP2D6P10635 497 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 STAT1P42224 750 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 GSTO1P78417 241 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 NFIAQ12857 509 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 BLMHQ13867 455 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 LRRC32Q14392 662 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 SMC1AQ14683 1233 aaKnown RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 PSMD6Q15008 389 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 SLC14A2Q15849 920 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 PPP1R26Q5T8A7 1209 aaPredicted RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 ABHD17CQ6PCB6 329 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 LILRA6Q6PI73 481 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 ENOSF1Q7L5Y1 443 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 RASGRP2Q7LDG7 609 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 ESX1Q8N693 406 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 C7orf31Q8N865 590 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 ZNF513Q8N8E2 541 aaPredicted RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 OR8H1Q8NGG4 311 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 TGFBRAP1Q8WUH2 860 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 PTPRN2Q92932 1015 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 PRMT6Q96LA8 375 aaPredicted RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 TCEANC2Q96MN5 208 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 CDK15Q96Q40 435 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 DEFB129Q9H1M3 183 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 TRIT1Q9H3H1 467 aaKnown RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 BRD9Q9H8M2 597 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 DDX4Q9NQI0 724 aaKnown RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 DMRT3Q9NQL9 472 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 SPTLC3Q9NUV7 552 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 XPO7Q9UIA9 1087 aaKnown RBP7.65□□□□□ -1.18
VPS53-217ENST00000575100 GPR34Q9UPC5 381 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 INVSQ9Y283 1065 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 SAMM50Q9Y512 469 aa7.65□□□□□ -1.18
VPS53-217ENST00000575100 FSD2A1L4K1 749 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ANKRD34BA5PLL1 514 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TSPY2A6NKD2 308 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TISP43B9A030 160 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 B9A039 149 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 E7EWF7 191 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TLL1O43897 1013 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TBX18O95935 607 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TSPY3P0CV98 308 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TSPY8P0CW00 308 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 SLURP2P0DP57 97 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 PIK3CBP42338 1070 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ATXN1P54253 815 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 TSPY1Q01534 308 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ICA1Q05084 483 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 DLGAP5Q15398 846 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CDCP2Q5VXM1 449 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CDC42EP5Q6NZY7 148 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CTR9Q6PD62 1173 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CPLX2Q6PUV4 134 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 HHIPL2Q6UWX4 724 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 OTOP1Q7RTM1 612 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 MAPKAPK5Q8IW41 473 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 GRIN3AQ8TCU5 1115 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 RHBDD1Q8TEB9 315 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TEKT1Q969V4 418 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CENPTQ96BT3 561 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ZDHHC15Q96MV8 337 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 JAKMIP1Q96N16 626 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 NT5C1BQ96P26 610 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 OSMRQ99650 979 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TREX2Q9BQ50 279 aaPredicted RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 TMEM120AQ9BXJ8 343 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 GTPBP4Q9BZE4 634 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 NAPBQ9H115 298 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 NSMCE4AQ9NXX6 385 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 SEL1LQ9UBV2 794 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CDK5RAP2Q96SN8 1893 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 BAZ2AQ9UIF9 1905 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 FAM86C2PA6NEL3 165 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 IGF2BP3O00425 579 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS53-217ENST00000575100 AHCYL1O43865 530 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 DNAJA2O60884 412 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 TMEM127O75204 238 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 DNTTP04053 509 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 GNAT2P19087 354 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CASTP20810 708 aaKnown RBP7.64□□□□□ -1.19
VPS53-217ENST00000575100 TNFSF4P23510 183 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 RBM5P52756 815 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS53-217ENST00000575100 SESN3P58005 492 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 DCAF7P61962 342 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 PRKG1Q13976 671 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ALX1Q15699 326 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 SUPT20HL1Q3ZLR7 823 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 FAM205BPQ63HN1 556 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 DSTYKQ6XUX3 929 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CHST3Q7LGC8 479 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ZFPM1Q8IX07 1006 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 KIAA0319LQ8IZA0 1049 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ARL8AQ96BM9 186 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 ERO1AQ96HE7 468 aa7.64□□□□□ -1.19
VPS53-217ENST00000575100 CLMNQ96JQ2 1002 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms