RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 BTBD18B2RXH4 712 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 F8W810 466 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 WNT7AO00755 349 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 PAPLNO95428 1278 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 GLUD1P00367 558 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 C1RP00736 705 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 ELMSAN1Q6PJG2 1045 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 HACE1Q8IYU2 909 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 HDAC7Q8WUI4 952 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 GTF3C6Q969F1 213 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 MTMR9Q96QG7 549 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 COLEC11Q9BWP8 271 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 APOL6Q9BWW8 343 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 TRIM6Q9C030 488 aaPredicted RBP23.4■■□□□ 1.34
VPS53-216ENST00000574029 DUSP12Q9UNI6 340 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 ZMYM2Q9UBW7 1377 aa23.4■■□□□ 1.34
VPS53-216ENST00000574029 USP34Q70CQ2 3546 aa23.39■■□□□ 1.34
VPS53-216ENST00000574029 A0A1B0GUA9 196 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 B4GALT5O43286 388 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 N4BP1O75113 896 aaKnown RBP23.39■■□□□ 1.33
VPS53-216ENST00000574029 LARGE1O95461 756 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 XRCC6P12956 609 aaKnown RBP eCLIP23.39■■□□□ 1.338e-6■■□□□ 13.6
VPS53-216ENST00000574029 TXKP42681 527 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 CWF19L1Q69YN2 538 aaKnown RBP23.39■■□□□ 1.33
VPS53-216ENST00000574029 SLC27A1Q6PCB7 646 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 GPR65Q8IYL9 337 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 PIGOQ8TEQ8 1089 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 POLR3FQ9H1D9 316 aaPredicted RBP23.39■■□□□ 1.33
VPS53-216ENST00000574029 WDR6Q9NNW5 1121 aaKnown RBP23.39■■□□□ 1.33
VPS53-216ENST00000574029 IGSF9Q9P2J2 1179 aa23.39■■□□□ 1.33
VPS53-216ENST00000574029 NEMFO60524 1076 aa23.38■■□□□ 1.33
VPS53-216ENST00000574029 NPR3P17342 541 aa23.38■■□□□ 1.33
VPS53-216ENST00000574029 AKAP5P24588 427 aa23.38■■□□□ 1.33
VPS53-216ENST00000574029 DIS3L2Q8IYB7 885 aaKnown RBP23.38■■□□□ 1.33
VPS53-216ENST00000574029 NSUN7Q8NE18 718 aaKnown RBP23.38■■□□□ 1.33
VPS53-216ENST00000574029 CCDC43Q96MW1 224 aaKnown RBP23.38■■□□□ 1.33
VPS53-216ENST00000574029 RFPL2O75678 378 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 NPTXRO95502 500 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 NBL1P41271 181 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 GRIK3Q13003 919 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 FUT10Q6P4F1 479 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 CDR2LQ86X02 465 aaPredicted RBP23.37■■□□□ 1.33
VPS53-216ENST00000574029 STAMQ92783 540 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 GPR62Q9BZJ7 368 aa23.37■■□□□ 1.33
VPS53-216ENST00000574029 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.37■■□□□ 1.33
VPS53-216ENST00000574029 CLUHO75153 1309 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 A0A087WWV3 80 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 USO1O60763 962 aaKnown RBP23.36■■□□□ 1.33
VPS53-216ENST00000574029 SPATA31C1P0DKV0 1188 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 AOC1P19801 751 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 USP41Q3LFD5 358 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 PPP4R3CPQ6ZMV5 832 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 FLCNQ8NFG4 579 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 ZNF707Q96C28 371 aaPredicted RBP23.36■■□□□ 1.33
VPS53-216ENST00000574029 B3GALT6Q96L58 329 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 PLEKHA4Q9H4M7 779 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 FNIP2Q9P278 1114 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 EPS15L1Q9UBC2 864 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 ADAM28Q9UKQ2 775 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 CACNA1HO95180 2353 aa23.36■■□□□ 1.33
VPS53-216ENST00000574029 POTEMA6NI47 508 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 SPATA31D3P0C874 917 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 MYBP10242 640 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 GBP2P32456 591 aaPredicted RBP23.35■■□□□ 1.33
VPS53-216ENST00000574029 LILRA6Q6PI73 481 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 SPATA31D4Q6ZUB0 917 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 PALB2Q86YC2 1186 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 SMG7Q92540 1137 aaKnown RBP23.35■■□□□ 1.33
VPS53-216ENST00000574029 PRIMPOLQ96LW4 560 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 TMEM60Q9H2L4 133 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 GPRC5CQ9NQ84 441 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 KLK14Q9P0G3 267 aa23.35■■□□□ 1.33
VPS53-216ENST00000574029 LRRIQ4A6NIV6 560 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 TGM5O43548 720 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 PI15O43692 258 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 JAK2O60674 1132 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 TRIM29Q14134 588 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 CDCA2Q69YH5 1023 aaPredicted RBP23.34■■□□□ 1.33
VPS53-216ENST00000574029 CATSPER3Q86XQ3 398 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 NT5C3AQ9H0P0 336 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 FZD8Q9H461 694 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 TUFT1Q9NNX1 390 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 PRMT7Q9NVM4 692 aaPredicted RBP23.34■■□□□ 1.33
VPS53-216ENST00000574029 ZDHHC7Q9NXF8 308 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 PARP2Q9UGN5 583 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 FBXL21Q9UKT6 434 aa23.34■■□□□ 1.33
VPS53-216ENST00000574029 NARSO43776 548 aaKnown RBP23.33■■□□□ 1.33
VPS53-216ENST00000574029 CREMQ03060 361 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 FAM187BQ17R55 369 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 MAEAQ7L5Y9 396 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 ASCL5Q7RTU5 278 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 SIX5Q8N196 739 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 MCPH1Q8NEM0 835 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 RSAD2Q8WXG1 361 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 RIN2Q8WYP3 895 aaPredicted RBP23.33■■□□□ 1.33
VPS53-216ENST00000574029 RABGGTAQ92696 567 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 MYADMQ96S97 322 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 RTP3Q9BQQ7 232 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 WNT16Q9UBV4 365 aa23.33■■□□□ 1.33
VPS53-216ENST00000574029 MED24O75448 989 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms