RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	GDAP1	Q8TB36	358 aa		18.35	■□□□□ 0.53
VPS53-215	ENST00000573028	PASK	Q96RG2	1323 aa		18.35	■□□□□ 0.53
VPS53-215	ENST00000573028	CXorf56	Q9H5V9	222 aa		18.35	■□□□□ 0.53
VPS53-215	ENST00000573028	CTNNAL1	Q9UBT7	734 aa		18.35	■□□□□ 0.53
VPS53-215	ENST00000573028	TBK1	Q9UHD2	729 aa		18.35	■□□□□ 0.53
VPS53-215	ENST00000573028	AGT	P01019	485 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	PEX3	P56589	373 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	AUH	Q13825	339 aa	Known RBP	18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	XXYLT1	Q8NBI6	393 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	DHX38	Q92620	1227 aa	Known RBP	18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	PRMT6	Q96LA8	375 aa	Predicted RBP	18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	IDI2	Q9BXS1	227 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	ABCF3	Q9NUQ8	709 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	GEMIN8	Q9NWZ8	242 aa	Known RBP	18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	PARP2	Q9UGN5	583 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	PIK3CD	O00329	1044 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	ECE2	O60344	883 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	ECEL1	O95672	775 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	NPR1	P16066	1061 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	CHRNB2	P17787	502 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	CCDC63	Q8NA47	563 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	PWWP2A	Q96N64	755 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	KIFC3	Q9BVG8	833 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	KRT5	P13647	590 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	HSPA6	P17066	643 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	CTNNA2	P26232	953 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	NF2	P35240	595 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	DRG2	P55039	364 aa	Known RBP	18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	NFIL3	Q16649	462 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	SGO2	Q562F6	1265 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	DAB2IP	Q5VWQ8	1189 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	CBWD2	Q8IUF1	395 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	TMEM117	Q9H0C3	514 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	KDM4C	Q9H3R0	1056 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	ARHGEF10L	Q9HCE6	1279 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	FGFR1OP2	Q9NVK5	253 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	PCYOX1	Q9UHG3	505 aa		18.34	■□□□□ 0.53
VPS53-215	ENST00000573028	RPSA	P08865	295 aa	Known RBP	18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	RASA3	Q14644	834 aa		18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	ARHGEF2	Q92974	986 aa	Known RBP	18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	CENPT	Q96BT3	561 aa		18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	KREMEN1	Q96MU8	473 aa		18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	CDC42EP4	Q9H3Q1	356 aa	Known RBP	18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	TOPORS	Q9NS56	1045 aa	Predicted RBP	18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	HOMER2	Q9NSB8	354 aa		18.33	■□□□□ 0.53
VPS53-215	ENST00000573028	PFAS	O15067	1338 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	GJC1	P36383	396 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	KRT17	Q04695	432 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	SLMAP	Q14BN4	828 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	CLUL1	Q15846	466 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	HAUS6	Q7Z4H7	955 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	ACCS	Q96QU6	501 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	TRIM7	Q9C029	511 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	WNT8A	Q9H1J5	351 aa		18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	18.33	■□□□□ 0.52
VPS53-215	ENST00000573028	TCP11X1	B4DZS4	312 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	RARG	P13631	454 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	ALDH1B1	P30837	517 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	RWDD2B	P57060	319 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	LACTB2	Q53H82	288 aa	Predicted RBP	18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	DACT2	Q5SW24	774 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	BTNL9	Q6UXG8	535 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	TAOK1	Q7L7X3	1001 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	EXOC3L1	Q86VI1	746 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	COL23A1	Q86Y22	540 aa	Predicted RBP	18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	UBE4B	O95155	1302 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	KIF13B	Q9NQT8	1826 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	ADRB2	P07550	413 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	C1orf220	Q5T0J3	134 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	NUGGC	Q68CJ6	796 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	SEPT14	Q6ZU15	432 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	TRPM8	Q7Z2W7	1104 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	SEPT12	Q8IYM1	358 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	CPXCR1	Q8N123	301 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	SEMA4D	Q92854	862 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	HEMGN	Q9BXL5	484 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	KLRG2	A4D1S0	409 aa	Predicted RBP	18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	ITGB5	P18084	799 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	CHKA	P35790	457 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	TNIP1	Q15025	636 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	KYNU	Q16719	465 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	SPDYC	Q5MJ68	293 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	MEX3C	Q5U5Q3	659 aa	Known RBP	18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	LLGL2	Q6P1M3	1020 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	MIGA2	Q7L4E1	593 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	N4BP2L2	Q92802	583 aa	Predicted RBP	18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	RPS6KC1	Q96S38	1066 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	EHMT1	Q9H9B1	1298 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	ZHX2	Q9Y6X8	837 aa		18.32	■□□□□ 0.52
VPS53-215	ENST00000573028	TMEM120B	A0PK00	339 aa		18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	PPIP5K2	O43314	1243 aa		18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	TOM1	O60784	492 aa		18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	EZR	P15311	586 aa	Known RBP	18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	GSC	P56915	257 aa	Predicted RBP	18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	ELF3	P78545	371 aa	Predicted RBP	18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	XRCC4	Q13426	336 aa		18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	NEDD9	Q14511	834 aa		18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	CNGA2	Q16280	664 aa		18.31	■□□□□ 0.52
VPS53-215	ENST00000573028	FAM102B	Q5T8I3	360 aa		18.31	■□□□□ 0.52

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