RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PRKCBP05771 671 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 STAG3L1P0CL83 205 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 AFMP43652 599 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 CACNB1Q02641 598 aaPredicted RBP22.61■■□□□ 1.21
VPS53-210ENST00000571456 PSMD2Q13200 908 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 PRPF4BQ13523 1007 aaKnown RBP22.61■■□□□ 1.21
VPS53-210ENST00000571456 TIGD5Q53EQ6 642 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 EP400NLQ6ZTU2 488 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 HAUS6Q7Z4H7 955 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 PRRX2Q99811 253 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 ADAM2Q99965 735 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 C17orf80Q9BSJ5 609 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 OSBPL7Q9BZF2 842 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 TMX1Q9H3N1 280 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 ELAC1Q9H777 363 aaKnown RBP22.61■■□□□ 1.21
VPS53-210ENST00000571456 PIN4Q9Y237 131 aaKnown RBP22.61■■□□□ 1.21
VPS53-210ENST00000571456 PCDHB13Q9Y5F0 798 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 ADGRA3Q8IWK6 1321 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 K7ENM7 598 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 SLC16A4O15374 487 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 SARSP49591 514 aaKnown RBP22.6■■□□□ 1.21
VPS53-210ENST00000571456 GTF2BQ00403 316 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 AMHR2Q16671 573 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 STAMQ92783 540 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 MRPL4Q9BYD3 311 aaKnown RBP22.6■■□□□ 1.21
VPS53-210ENST00000571456 MRPL44Q9H9J2 332 aaKnown RBP22.6■■□□□ 1.21
VPS53-210ENST00000571456 POLD4Q9HCU8 107 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 MUTYHQ9UIF7 546 aa22.6■■□□□ 1.21
VPS53-210ENST00000571456 A0A0U1RQF3 1178 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 A0A1B0GUA9 196 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 N4BP3O15049 544 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 ZNF623O75123 536 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 GADD45BO75293 160 aaPredicted RBP22.59■■□□□ 1.21
VPS53-210ENST00000571456 EOMESO95936 686 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 FAM189BP81408 668 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 COASYQ13057 564 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 COL19A1Q14993 1142 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 POSTNQ15063 836 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 IER5LQ5T953 404 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 TWF2Q6IBS0 349 aaKnown RBP22.59■■□□□ 1.21
VPS53-210ENST00000571456 FAM117BQ6P1L5 589 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 ZPBP2Q6X784 338 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 ZNF720Q7Z2F6 126 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 SFR1Q86XK3 245 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 HACE1Q8IYU2 909 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 FIZ1Q96SL8 496 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 ADPGKQ9BRR6 497 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 EXOC7Q9UPT5 735 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 INSL6Q9Y581 213 aa22.59■■□□□ 1.21
VPS53-210ENST00000571456 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.58■■□□□ 1.21
VPS53-210ENST00000571456 C9IYK1 514 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 HOXA2O43364 376 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 GFRA3O60609 400 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 NR1I2O75469 434 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 CSDE1O75534 798 aaKnown RBP22.58■■□□□ 1.21
VPS53-210ENST00000571456 SMC2O95347 1197 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 ARF4P18085 180 aaPredicted RBP22.58■■□□□ 1.21
VPS53-210ENST00000571456 HOXA11P31270 313 aaPredicted RBP22.58■■□□□ 1.21
VPS53-210ENST00000571456 CUL4BQ13620 913 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 TPRNQ4KMQ1 711 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 SLC27A1Q6PCB7 646 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 BMP8AQ7Z5Y6 402 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 NPAS4Q8IUM7 802 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 TOP1MTQ969P6 601 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 KIFC3Q9BVG8 833 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 TMEM161AQ9NX61 479 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 FAM186AA6NE01 2351 aa22.58■■□□□ 1.21
VPS53-210ENST00000571456 UBE4BO95155 1302 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 EIF3DO15371 548 aaKnown RBP eCLIP22.57■■□□□ 1.2
VPS53-210ENST00000571456 LIG1P18858 919 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 PTMSP20962 102 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 FGFR4P22455 802 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 EHHADHQ08426 723 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 DPYDQ12882 1025 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 KCNB1Q14721 858 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 TMEM132AQ24JP5 1023 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 TCTN1Q2MV58 587 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 TCEAL5Q5H9L2 206 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 FAM26FQ5R3K3 315 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 RTN4RL1Q86UN2 441 aaPredicted RBP22.57■■□□□ 1.2
VPS53-210ENST00000571456 PGBD4Q96DM1 585 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 POP1Q99575 1024 aaKnown RBP22.57■■□□□ 1.2
VPS53-210ENST00000571456 LMBRD1Q9NUN5 540 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 EXOC1Q9NV70 894 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 RMND1Q9NWS8 449 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 TBX20Q9UMR3 447 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 TNFSF13BQ9Y275 285 aa22.57■■□□□ 1.2
VPS53-210ENST00000571456 NLRC5Q86WI3 1866 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 ZMYM2Q9UBW7 1377 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 PPP1R37O75864 691 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 KIF20AO95235 890 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 PIGRP01833 764 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 TCF15Q12870 199 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 DCAF4L1Q3SXM0 396 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 MAP4K3Q8IVH8 894 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 MYOCDQ8IZQ8 938 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 LINC01599Q8WXQ3 324 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 EDAQ92838 391 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 GSDMAQ96QA5 445 aa22.56■■□□□ 1.2
VPS53-210ENST00000571456 STRA6Q9BX79 667 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms