RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CYP26A1O43174 497 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 CNMDO75829 334 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 FARP2O94887 1054 aaPredicted RBP21.89■■□□□ 1.09
CLN3-230ENST00000568076 FTLP02792 175 aaPredicted RBP21.89■■□□□ 1.09
CLN3-230ENST00000568076 DLATP10515 647 aaKnown RBP21.89■■□□□ 1.09
CLN3-230ENST00000568076 GTF2H1P32780 548 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 PRPF4BQ13523 1007 aaKnown RBP21.89■■□□□ 1.09
CLN3-230ENST00000568076 PRRT2Q7Z6L0 340 aaPredicted RBP21.89■■□□□ 1.09
CLN3-230ENST00000568076 SLC47A2Q86VL8 602 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 NCAPG2Q86XI2 1143 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 RASGEF1CQ8N431 466 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 OTUD5Q96G74 571 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 PORCNQ9H237 461 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 VPS18Q9P253 973 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 ADAM21Q9UKJ8 722 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 AMFRQ9UKV5 643 aa21.89■■□□□ 1.09
CLN3-230ENST00000568076 GLRA2P23416 452 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 MFAP3P55082 362 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 TAF3Q5VWG9 929 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 KLHL7Q8IXQ5 586 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 FAM71BQ8TC56 605 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.88■■□□□ 1.093e-6■□□□□ 10.1
CLN3-230ENST00000568076 MED4Q9NPJ6 270 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 NOC2LQ9Y3T9 749 aaKnown RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 ESYT3A0FGR9 886 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 H0YCG3 227 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 AGPSO00116 658 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 PGRMC1O00264 195 aaKnown RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 DDX3YO15523 660 aaKnown RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 RAD51CO43502 376 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 CYP2C19P33261 490 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 ARL2P36404 184 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 CARSP49589 748 aaKnown RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 EPHB4P54760 987 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 GUCY2DQ02846 1103 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 MOB2Q70IA6 237 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 PROCA1Q8NCQ7 364 aaPredicted RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 ZNF516Q92618 1163 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 PAGR1Q9BTK6 254 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 NIFKQ9BYG3 293 aaKnown RBP21.88■■□□□ 1.09
CLN3-230ENST00000568076 EPB41L5Q9HCM4 733 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 PRDM4Q9UKN5 801 aa21.88■■□□□ 1.09
CLN3-230ENST00000568076 PHACTR2O75167 634 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 WNT7BP56706 349 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 TNNC1P63316 161 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 KCNN1Q92952 543 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 TATDN2Q93075 761 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 AP1M1Q9BXS5 423 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 HAPLN2Q9GZV7 340 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 ASCC2Q9H1I8 757 aaPredicted RBP21.87■■□□□ 1.09
CLN3-230ENST00000568076 RNF181Q9P0P0 153 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 IREB2P48200 963 aaKnown RBP21.87■■□□□ 1.09
CLN3-230ENST00000568076 LIG4P49917 911 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 IRX3P78415 501 aaPredicted RBP21.87■■□□□ 1.09
CLN3-230ENST00000568076 FMO1Q01740 532 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 ENPEPQ07075 957 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 HSP90B2PQ58FF3 399 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 C15orf39Q6ZRI6 1047 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 IFT20Q8IY31 132 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 RIN2Q8WYP3 895 aaPredicted RBP21.87■■□□□ 1.09
CLN3-230ENST00000568076 DHX38Q92620 1227 aaKnown RBP21.87■■□□□ 1.09
CLN3-230ENST00000568076 CALR3Q96L12 384 aaKnown RBP21.87■■□□□ 1.09
CLN3-230ENST00000568076 NT5C1BQ96P26 610 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 STYXL1Q9Y6J8 313 aa21.87■■□□□ 1.09
CLN3-230ENST00000568076 ZNF233A6NK53 670 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 EXTL3O43909 919 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 MMEP08473 750 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 GGCXP38435 758 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 HADHBP55084 474 aaKnown RBP21.86■■□□□ 1.09
CLN3-230ENST00000568076 TRADDQ15628 312 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 DCAF12L1Q5VU92 463 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 EMBQ6PCB8 327 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 USP37Q86T82 979 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 RHOT2Q8IXI1 618 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 CASKIN2Q8WXE0 1202 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 CAVIN3Q969G5 261 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 PI4K2AQ9BTU6 479 aa21.86■■□□□ 1.09
CLN3-230ENST00000568076 RTN2O75298 545 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 EDN1P05305 212 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 CYP11B1P15538 503 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 NAMPTP43490 491 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 NLRP11P59045 1033 aaKnown RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 TCEAL1Q15170 157 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 TARBP2Q15633 366 aaKnown RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 LMBRD2Q68DH5 695 aaPredicted RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 EEPD1Q7L9B9 569 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 TSEN2Q8NCE0 465 aaKnown RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 PSPC1Q8WXF1 523 aaKnown RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 FHDC1Q9C0D6 1143 aaPredicted RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 LRRC37A2A6NM11 1700 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 LRRIQ4A6NIV6 560 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 ITGA4P13612 1032 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 ABCD1P33897 745 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 GPC5P78333 572 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 CLDN10P78369 228 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 LY6KQ17RY6 165 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 CRELD2Q6UXH1 353 aaPredicted RBP21.85■■□□□ 1.09
CLN3-230ENST00000568076 ERO1BQ86YB8 467 aa21.85■■□□□ 1.09
CLN3-230ENST00000568076 SLC7A3Q8WY07 619 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms