RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 NUP62CLQ9H1M0 184 aa28.47■■■□□ 2.15
NME3-208ENST00000565379 MRPL42Q9Y6G3 142 aaKnown RBP28.47■■■□□ 2.15
NME3-208ENST00000565379 ATG2AQ2TAZ0 1938 aa28.47■■■□□ 2.15
NME3-208ENST00000565379 RALGAPA2Q2PPJ7 1873 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 CSPG5O95196 566 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 PRKCBP05771 671 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 ZSCAN20P17040 1043 aaPredicted RBP28.46■■■□□ 2.15
NME3-208ENST00000565379 NPAS4Q8IUM7 802 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 MRPL38Q96DV4 380 aaKnown RBP28.46■■■□□ 2.15
NME3-208ENST00000565379 CCDC51Q96ER9 411 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 SAMD11Q96NU1 681 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 C1QTNF1Q9BXJ1 281 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 AGPAT5Q9NUQ2 364 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 PCDHA5Q9Y5H7 936 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 KIAA1671Q9BY89 1806 aa28.46■■■□□ 2.15
NME3-208ENST00000565379 EIF3DO15371 548 aaKnown RBP eCLIP28.45■■■□□ 2.14
NME3-208ENST00000565379 NMT1P30419 496 aaKnown RBP28.45■■■□□ 2.14
NME3-208ENST00000565379 PRPF4BQ13523 1007 aaKnown RBP28.45■■■□□ 2.14
NME3-208ENST00000565379 NT5DC1Q5TFE4 455 aa28.45■■■□□ 2.14
NME3-208ENST00000565379 ADAM2Q99965 735 aa28.45■■■□□ 2.14
NME3-208ENST00000565379 MRPL4Q9BYD3 311 aaKnown RBP28.45■■■□□ 2.14
NME3-208ENST00000565379 TBX20Q9UMR3 447 aa28.45■■■□□ 2.14
NME3-208ENST00000565379 EXOC7Q9UPT5 735 aa28.45■■■□□ 2.14
NME3-208ENST00000565379 GRM6O15303 877 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 TSPAN1O60635 241 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 CSDE1O75534 798 aaKnown RBP28.44■■■□□ 2.14
NME3-208ENST00000565379 GCNT3O95395 438 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 BMPR1AP36894 532 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 SARSP49591 514 aaKnown RBP28.44■■■□□ 2.14
NME3-208ENST00000565379 AMHR2Q16671 573 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 SKOR2Q2VWA4 1001 aaPredicted RBP28.44■■■□□ 2.14
NME3-208ENST00000565379 STRA6Q9BX79 667 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 RNF216Q9NWF9 866 aaPredicted RBP28.44■■■□□ 2.14
NME3-208ENST00000565379 HCSTQ9UBK5 93 aa28.44■■■□□ 2.14
NME3-208ENST00000565379 UBE4BO95155 1302 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 CNTNAP2Q9UHC6 1331 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 PPP1R37O75864 691 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 KIF20AO95235 890 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 FGFR4P22455 802 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 NOTUMQ6P988 496 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 APBB1IPQ7Z5R6 666 aaPredicted RBP28.43■■■□□ 2.14
NME3-208ENST00000565379 CLP1Q92989 425 aaKnown RBP28.43■■■□□ 2.14
NME3-208ENST00000565379 SYAP1Q96A49 352 aaPredicted RBP28.43■■■□□ 2.14
NME3-208ENST00000565379 TMEM206Q9H813 350 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 C1orf112Q9NSG2 853 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 TBC1D7Q9P0N9 293 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 KIAA1468Q9P260 1216 aa28.43■■■□□ 2.14
NME3-208ENST00000565379 PIN4Q9Y237 131 aaKnown RBP28.43■■■□□ 2.14
NME3-208ENST00000565379 DSC3Q14574 896 aa28.42■■■□□ 2.14
NME3-208ENST00000565379 CAMK4Q16566 473 aa28.42■■■□□ 2.14
NME3-208ENST00000565379 L1TD1Q5T7N2 865 aaKnown RBP28.42■■■□□ 2.14
NME3-208ENST00000565379 ZPBP2Q6X784 338 aa28.42■■■□□ 2.14
NME3-208ENST00000565379 MAP4K3Q8IVH8 894 aa28.42■■■□□ 2.14
NME3-208ENST00000565379 ACCSQ96QU6 501 aa28.42■■■□□ 2.14
NME3-208ENST00000565379 TRAIPQ9BWF2 469 aa28.42■■■□□ 2.14
NME3-208ENST00000565379 A0A1B0GUA9 196 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 C9IYK1 514 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 C5orf67F2Z3F1 127 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 PIGRP01833 764 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 SKIP12755 728 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 TMEM132AQ24JP5 1023 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 KLHL40Q2TBA0 621 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 TCEAL5Q5H9L2 206 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 EPM2AIP1Q7L775 607 aaPredicted RBP28.41■■■□□ 2.14
NME3-208ENST00000565379 TAS1R3Q7RTX0 852 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 CMTR2Q8IYT2 770 aaKnown RBP28.41■■■□□ 2.14
NME3-208ENST00000565379 TRIML1Q8N9V2 468 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 UBE2ZQ9H832 354 aaPredicted RBP28.41■■■□□ 2.14
NME3-208ENST00000565379 SLC39A2Q9NP94 309 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 RGS18Q9NS28 235 aa28.41■■■□□ 2.14
NME3-208ENST00000565379 N4BP3O15049 544 aa28.4■■■□□ 2.14
NME3-208ENST00000565379 ARF4P18085 180 aaPredicted RBP28.4■■■□□ 2.14
NME3-208ENST00000565379 HOXA11P31270 313 aaPredicted RBP28.4■■■□□ 2.14
NME3-208ENST00000565379 CCDC183Q5T5S1 534 aa28.4■■■□□ 2.14
NME3-208ENST00000565379 ZNF507Q8TCN5 953 aa28.4■■■□□ 2.14
NME3-208ENST00000565379 ALG13Q9NP73 1137 aaKnown RBP28.4■■■□□ 2.14
NME3-208ENST00000565379 LRFN2Q9ULH4 789 aa28.4■■■□□ 2.14
NME3-208ENST00000565379 TNFSF13BQ9Y275 285 aa28.4■■■□□ 2.14
NME3-208ENST00000565379 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP28.39■■■□□ 2.14
NME3-208ENST00000565379 STAG3L1P0CL83 205 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 MYBP10242 640 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 STK4Q13043 487 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 PTPROQ16827 1216 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 BMT2Q1RMZ1 405 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 ZC2HC1CQ53FD0 456 aaPredicted RBP28.39■■■□□ 2.14
NME3-208ENST00000565379 ZNF658Q5TYW1 1059 aaPredicted RBP28.39■■■□□ 2.14
NME3-208ENST00000565379 ATF7IP2Q5U623 682 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 HPS3Q969F9 1004 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 BICD1Q96G01 975 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 ACO2Q99798 780 aaKnown RBP28.39■■■□□ 2.14
NME3-208ENST00000565379 ADPGKQ9BRR6 497 aa28.39■■■□□ 2.14
NME3-208ENST00000565379 FGFR1P11362 822 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 DNAJB1P25685 340 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 PPP1R2P41236 205 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 RAB27AP51159 221 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 CASP5P51878 434 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 TWF2Q6IBS0 349 aaKnown RBP28.38■■■□□ 2.13
NME3-208ENST00000565379 SLC27A1Q6PCB7 646 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 SLC24A5Q71RS6 500 aa28.38■■■□□ 2.13
NME3-208ENST00000565379 RAPGEFL1Q9UHV5 662 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms