RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ECE1P42892 770 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 ZNF131P52739 623 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 VPS72Q15906 364 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 TMEM179Q6ZVK1 233 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 STXBP4Q6ZWJ1 553 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 SLC13A5Q86YT5 568 aaPredicted RBP14.18□□□□□ -0.14
CLN3-210ENST00000563874 PPM1KQ8N3J5 372 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 NACC1Q96RE7 527 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 NUP85Q9BW27 656 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.18□□□□□ -0.14
CLN3-210ENST00000563874 CNOT7Q9UIV1 285 aaKnown RBP14.18□□□□□ -0.14
CLN3-210ENST00000563874 PFASO15067 1338 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 TCP11X1B4DZS4 312 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 UBOX5O94941 541 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 CALCAP01258 141 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 CYP3A4P08684 503 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 RARGP13631 454 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 CHRNB2P17787 502 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 VAMP7P51809 220 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 RRP1BQ14684 758 aaKnown RBP14.18□□□□□ -0.14
CLN3-210ENST00000563874 NFIL3Q16649 462 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 PHLDB2Q86SQ0 1253 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 CCDC50Q8IVM0 306 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 GDAP1Q8TB36 358 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 ZNF577Q9BSK1 485 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 CDC42EP4Q9H3Q1 356 aaKnown RBP14.18□□□□□ -0.14
CLN3-210ENST00000563874 L3MBTL1Q9Y468 752 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 VPS41P49754 854 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 KCNJ2P63252 427 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 ITIH4Q14624 930 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 ZKSCAN8Q15776 578 aaPredicted RBP14.18□□□□□ -0.14
CLN3-210ENST00000563874 ZNF564Q8TBZ8 553 aaPredicted RBP14.18□□□□□ -0.14
CLN3-210ENST00000563874 PLEKHO2Q8TD55 490 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 EPS8L1Q8TE68 723 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 ATG4AQ8WYN0 398 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 GMCL1Q96IK5 515 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 PWWP2AQ96N64 755 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 KCNK9Q9NPC2 374 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 SEL1LQ9UBV2 794 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 MTUS1Q9ULD2 1270 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 ZBTB21Q9ULJ3 1066 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 C10orf71Q711Q0 1435 aa14.18□□□□□ -0.14
CLN3-210ENST00000563874 TMEM120BA0PK00 339 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 RTN2O75298 545 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 CHKAP35790 457 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 CALCOCO2Q13137 446 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 PPP2R5CQ13362 524 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 SLMAPQ14BN4 828 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 RNF207Q6ZRF8 634 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 ARHGEF2Q92974 986 aaKnown RBP14.17□□□□□ -0.14
CLN3-210ENST00000563874 ART4Q93070 314 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 ZNF653Q96CK0 615 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 PARP2Q9UGN5 583 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 GH1P01241 217 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 HSPA6P17066 643 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 MAP2K1Q02750 393 aaPredicted RBP14.17□□□□□ -0.14
CLN3-210ENST00000563874 CETN1Q12798 172 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 KIF2BQ8N4N8 673 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 SLC5A5Q92911 643 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 STAMBPL1Q96FJ0 436 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 PASKQ96RG2 1323 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 TAOK3Q9H2K8 898 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 ASIC3Q9UHC3 531 aa14.17□□□□□ -0.14
CLN3-210ENST00000563874 TMEM150BA6NC51 233 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 SNX3O60493 162 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 ECEL1O95672 775 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 ALAS1P13196 640 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 SCP2P22307 547 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 SIX1Q15475 284 aaPredicted RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 CLUL1Q15846 466 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 ZYXQ15942 572 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 CEP55Q53EZ4 464 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 C1orf220Q5T0J3 134 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 NUGGCQ68CJ6 796 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 TATDN1Q6P1N9 297 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 PADI6Q6TGC4 694 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 SEPT14Q6ZU15 432 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 TAOK1Q7L7X3 1001 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 GMCL1P1Q8NEA9 526 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 CD101Q93033 1021 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 CCDC127Q96BQ5 260 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 TBK1Q9UHD2 729 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 GREB1LQ9C091 1923 aaPredicted RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 POLRMTO00411 1230 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 HADHBP55084 474 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 KRT17Q04695 432 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 TNIP1Q15025 636 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 INTS8Q75QN2 995 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 KREMEN1Q96MU8 473 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 ZDHHC15Q96MV8 337 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 RPS6KC1Q96S38 1066 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 FAM118BQ9BPY3 351 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 NSRP1Q9H0G5 558 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 WNT8AQ9H1J5 351 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 VEZTQ9HBM0 779 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 AAASQ9NRG9 546 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 SLC8A1P32418 973 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 KYNUQ16719 465 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 EPC2Q52LR7 807 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 DAB2IPQ5VWQ8 1189 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms