RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 FITM2Q8N6M3 262 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 LRRC57Q8N9N7 239 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 KCNV2Q8TDN2 545 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PIGSQ96S52 555 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 TRIM9Q9C026 710 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 GOPCQ9HD26 462 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PCMTD2Q9NV79 361 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 DLGAP2Q9P1A6 1054 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 SYNPO2Q9UMS6 1093 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 PACSIN2Q9UNF0 486 aaPredicted RBP11.69□□□□□ -0.54
USP3-206ENST00000558157 PCDHGA4Q9Y5G9 962 aa11.69□□□□□ -0.54
USP3-206ENST00000558157 SKIP12755 728 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 SMARCA1P28370 1054 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ATP5DP30049 168 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 TUBP50607 506 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 RASSF2P50749 326 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 PABPC1LQ4VXU2 614 aaKnown RBP11.68□□□□□ -0.54
USP3-206ENST00000558157 HEATR3Q7Z4Q2 680 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 SCYL3Q8IZE3 742 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ATP8B4Q8TF62 1192 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ZC3H15Q8WU90 426 aaKnown RBP11.68□□□□□ -0.54
USP3-206ENST00000558157 DYDC1Q8WWB3 177 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 NCSTNQ92542 709 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 DCLRE1BQ9H816 532 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ETNK1Q9HBU6 452 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 GINM1Q9NU53 330 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ZDHHC18Q9NUE0 388 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 STOML1Q9UBI4 398 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 PARP2Q9UGN5 583 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 TTI1O43156 1089 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 SHBGP04278 402 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 PDHA1P08559 390 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 POLE2P56282 527 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 STK4Q13043 487 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 DHX34Q14147 1143 aaKnown RBP11.68□□□□□ -0.54
USP3-206ENST00000558157 DUPD1Q68J44 220 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 PIK3AP1Q6ZUJ8 805 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 SLFN11Q7Z7L1 901 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ADGRF4Q8IZF3 695 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 METTL13Q8N6R0 699 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 PTPRN2Q92932 1015 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 KLRG1Q96E93 195 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 ERP44Q9BS26 406 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 AZI2Q9H6S1 392 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 JMJD4Q9H9V9 463 aa11.68□□□□□ -0.54
USP3-206ENST00000558157 NKX1-2Q9UD57 310 aaPredicted RBP11.68□□□□□ -0.54
USP3-206ENST00000558157 SEC63Q9UGP8 760 aaKnown RBP11.68□□□□□ -0.54
USP3-206ENST00000558157 BZW2Q9Y6E2 419 aaKnown RBP11.68□□□□□ -0.54
USP3-206ENST00000558157 A0A0A6YYK5 440 aaPredicted RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 BMP3P12645 472 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 RFC5P40937 340 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 PTDSS1P48651 473 aaKnown RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 NPEPPSP55786 919 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 PTENP60484 403 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 OCRLQ01968 901 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 PPARDQ03181 441 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 MUM1Q2TAK8 710 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 FAM83BQ5T0W9 1011 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 ZNF513Q8N8E2 541 aaPredicted RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 AZIN2Q96A70 460 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 CDCA5Q96FF9 252 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 RUNDC3BQ96NL0 473 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 NUDCD1Q96RS6 583 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 AP1M1Q9BXS5 423 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 SEMA6BQ9H3T3 888 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 LARSQ9P2J5 1176 aaKnown RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 MAGEA13PA6NCF6 341 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 TCP11X1B4DZS4 312 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 USP17L10C9JJH3 530 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 TLR2O60603 784 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 USP2O75604 605 aaPredicted RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 VHLP40337 213 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 GSTA3Q16772 222 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 GUF1Q8N442 669 aaKnown RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-206ENST00000558157 UTP4Q969X6 686 aaKnown RBP11.67□□□□□ -0.54
USP3-206ENST00000558157 FGFR1OP2Q9NVK5 253 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP3-206ENST00000558157 BARHL2Q9NY43 387 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 RASAL2Q9UJF2 1139 aa11.67□□□□□ -0.54
USP3-206ENST00000558157 NVLO15381 856 aaKnown RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 HNRNPCL1O60812 293 aaKnown RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 IFNAR2P48551 515 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 ASIC1P78348 528 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 IFI35P80217 286 aaPredicted RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 IKQ13123 557 aaPredicted RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 DGKZQ13574 1117 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 KPNB1Q14974 876 aaKnown RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 C1QTNF12Q5T7M4 302 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 ACBD5Q5T8D3 534 aaPredicted RBP11.66□□□□□ -0.54
USP3-206ENST00000558157 ARMC3Q5W041 872 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 CKAP2Q8WWK9 683 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 ZNF333Q96JL9 665 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 NLRC4Q9NPP4 1024 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 SH3GLB2Q9NR46 395 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 PICK1Q9NRD5 415 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 PNMA3Q9UL41 463 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 BLOC1S6Q9UL45 172 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 INTUQ9ULD6 942 aa11.66□□□□□ -0.54
USP3-206ENST00000558157 USP20Q9Y2K6 914 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms