RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 GID8Q9NWU2 228 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 THEGQ9P2T0 379 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 GSC2O15499 205 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 FOXO3O43524 673 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 CCDC22O60826 627 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 CHRNB1P11230 501 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 ANPEPP15144 967 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 ITGA6P23229 1130 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 PPARGP37231 505 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-226ENST00000556825 GSSP48637 474 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 KLK7P49862 253 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 CHN2P52757 468 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 ASPHQ12797 758 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 SLC29A2Q14542 456 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 LMBRD2Q68DH5 695 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-226ENST00000556825 SIGIRRQ6IA17 410 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 BORAQ6PGQ7 559 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 C2CD5Q86YS7 1000 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 PTCD2Q8WV60 388 aaKnown RBP14.7□□□□□ -0.06
SHMT2-226ENST00000556825 ESR2Q92731 530 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 DSCC1Q9BVC3 393 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 NT5C3AQ9H0P0 336 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 CSRNP2Q9H175 543 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 PIH1D3Q9NQM4 214 aaKnown RBP14.7□□□□□ -0.06
SHMT2-226ENST00000556825 DNAJB4Q9UDY4 337 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 ASAP1Q9ULH1 1129 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 TRAF3IP3Q9Y228 551 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 STARD13Q9Y3M8 1113 aa14.7□□□□□ -0.06
SHMT2-226ENST00000556825 A0A087X0B3 334 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 OCM2P0CE71 109 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 OCMP0CE72 109 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 ZNF12P17014 697 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 TOB1P50616 345 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 NADK2Q4G0N4 442 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 VSTM1Q6UX27 236 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 ABTB2Q8N961 1025 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 OR7G1Q8NGA0 311 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 TTLL11Q8NHH1 800 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 LBHD1Q9BQE6 289 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 BTBD10Q9BSF8 475 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 DDX47Q9H0S4 455 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 GIN1Q9NXP7 522 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 C6orf203Q9P0P8 240 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 PIK3CDO00329 1044 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 RASGRF2O14827 1237 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 ADCY6O43306 1168 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 UQCRBP14927 111 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 PRKACBP22694 351 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 SLC16A2P36021 539 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 RPS3AP61247 264 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 RPL26P61254 145 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 BOLA3Q53S33 107 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 ERI1Q8IV48 349 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 EPS8L3Q8TE67 593 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 EDC3Q96F86 508 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 PCMTD1Q96MG8 357 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 GPATCH1Q9BRR8 931 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 MAGEC2Q9UBF1 373 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 AMACRQ9UHK6 382 aa14.69□□□□□ -0.06
SHMT2-226ENST00000556825 DBR1Q9UK59 544 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 PA2G4Q9UQ80 394 aaKnown RBP14.69□□□□□ -0.06
SHMT2-226ENST00000556825 PITPNM2Q9BZ72 1349 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 FAM208AQ9UK61 1670 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 PFDN6O15212 129 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 XPOTO43592 962 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 EXOC3O60645 756 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 CLPTM1O96005 669 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 FUCA1P04066 466 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 CDH3P22223 829 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 C16orf72Q14CZ0 275 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 NAB2Q15742 525 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 PHKG1Q16816 387 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 TMTC4Q5T4D3 741 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 NIPAL1Q6NVV3 410 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 DCDC5Q6ZRR9 648 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 FASTKD5Q7L8L6 764 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 PDSS2Q86YH6 399 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 RHOT2Q8IXI1 618 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ZFRQ96KR1 1074 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 CTRCQ99895 268 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 AP1M1Q9BXS5 423 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ANKRD2Q9GZV1 360 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 STRN4Q9NRL3 753 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 PACSIN2Q9UNF0 486 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 TLL2Q9Y6L7 1015 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 IVNS1ABPQ9Y6Y0 642 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 STK36Q9NRP7 1315 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 RNF113AO15541 343 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ZWINTO95229 277 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 GAS8O95995 478 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 TAC1P20366 129 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 STX2P32856 288 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 GFPT1Q06210 699 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 THOC5Q13769 683 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 SPCS2Q15005 226 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 CRY1Q16526 586 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ZNF658Q5TYW1 1059 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 UGT2A3Q6UWM9 527 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 NOSTRINQ8IVI9 506 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 LSMEM2Q8N112 164 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms