RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 KIAA1468Q9P260 1216 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 KIAA1024Q9UPX6 916 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 PCDHGC5Q9Y5F6 944 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 NT5C1B-RDH14C9J2C7 533 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 OFD1O75665 1012 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 ITGA4P13612 1032 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 IL9P15248 144 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 CYP11B2P19099 503 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 CA8P35219 290 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 LTBRP36941 435 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 PRPHP41219 470 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 DLX2Q07687 328 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-214ENST00000554604 ADAM15Q13444 863 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 TMEM132AQ24JP5 1023 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 UBXN11Q5T124 520 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 AGMOQ6ZNB7 445 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 MRPL10Q7Z7H8 261 aaKnown RBP13.69□□□□□ -0.22
SHMT2-214ENST00000554604 ZBTB8OSQ8IWT0 167 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 HACE1Q8IYU2 909 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 SLC39A11Q8N1S5 342 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 IGSF22Q8N9C0 903 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 FAM193BQ96PV7 902 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-214ENST00000554604 CSRNP2Q9H175 543 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 DNAJC25Q9H1X3 360 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 BHMT2Q9H2M3 363 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 NGRNQ9NPE2 291 aaKnown RBP13.69□□□□□ -0.22
SHMT2-214ENST00000554604 UBN1Q9NPG3 1134 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 RRAGDQ9NQL2 400 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-214ENST00000554604 KANSL3Q9P2N6 904 aa13.69□□□□□ -0.22
SHMT2-214ENST00000554604 PER2O15055 1255 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 TBX10O75333 385 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 SRGAP2BP0DMP2 458 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 ARF4P18085 180 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-214ENST00000554604 SSTR3P32745 418 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-214ENST00000554604 IQCB1Q15051 598 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 PPP2R5AQ15172 486 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 LUZP1Q86V48 1076 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 FAM178BQ8IXR5 827 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 CEP57L1Q8IYX8 460 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 IFT74Q96LB3 600 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 CLIC6Q96NY7 704 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 CDCA3Q99618 268 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-214ENST00000554604 BPIFA3Q9BQP9 254 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 APOL6Q9BWW8 343 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 EIF2AQ9BY44 585 aaKnown RBP13.68□□□□□ -0.22
SHMT2-214ENST00000554604 NAT10Q9H0A0 1025 aaKnown RBP13.68□□□□□ -0.22
SHMT2-214ENST00000554604 C2orf40Q9H1Z8 148 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 NRDE2Q9H7Z3 1164 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 POLD4Q9HCU8 107 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 CD207Q9UJ71 328 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 KCNH3Q9ULD8 1083 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 DNM3Q9UQ16 869 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 IPPQ9Y573 584 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 TRIP11Q15643 1979 aa13.68□□□□□ -0.22
SHMT2-214ENST00000554604 PP2D1A8MPX8 630 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 FSCN2O14926 492 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 B4GALT5O43286 388 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 POMCP01189 267 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 CLCN1P35523 988 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 NLRP12P59046 1061 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 SMC1AQ14683 1233 aaKnown RBP13.67□□□□□ -0.22
SHMT2-214ENST00000554604 ZRSR1Q15695 479 aaKnown RBP13.67□□□□□ -0.22
SHMT2-214ENST00000554604 ECM1Q16610 540 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 AMHR2Q16671 573 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 SLC27A1Q6PCB7 646 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 KRBA2Q6ZNG9 492 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 C11orf57Q6ZUT1 292 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-214ENST00000554604 SMG8Q8ND04 991 aaKnown RBP13.67□□□□□ -0.22
SHMT2-214ENST00000554604 DEPTORQ8TB45 409 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 KIFAP3Q92845 792 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 PRIMPOLQ96LW4 560 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 PRMT7Q9NVM4 692 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-214ENST00000554604 DNAJB4Q9UDY4 337 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 HOOK1Q9UJC3 728 aaKnown RBP13.67□□□□□ -0.22
SHMT2-214ENST00000554604 HES2Q9Y543 173 aa13.67□□□□□ -0.22
SHMT2-214ENST00000554604 VWA3AA6NCI4 1184 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 AP5Z1O43299 807 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 NPTXRO95502 500 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 GALTP07902 379 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 CDC25AP30304 524 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 NAMPTP43490 491 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 ATP2C1P98194 919 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-214ENST00000554604 SMAD4Q13485 552 aaKnown RBP13.66□□□□□ -0.22
SHMT2-214ENST00000554604 IL17AQ16552 155 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 MAPK6Q16659 721 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 DUSP6Q16828 381 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 CDCA2Q69YH5 1023 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-214ENST00000554604 SARM1Q6SZW1 724 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 CDR2LQ86X02 465 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-214ENST00000554604 ZNF280BQ86YH2 543 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 GJD3Q8N144 294 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 VPS52Q8N1B4 723 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 BSNDQ8WZ55 320 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 IGSF21Q96ID5 467 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 CDK5RAP3Q96JB5 506 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 GAD1Q99259 594 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 PRKAG3Q9UGI9 489 aa13.66□□□□□ -0.22
SHMT2-214ENST00000554604 BARX2Q9UMQ3 279 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-214ENST00000554604 A0A1B0GUA9 196 aa13.65□□□□□ -0.22
SHMT2-214ENST00000554604 ARL5CA6NH57 179 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms