RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 BLOC1S4Q9NUP1 217 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 ARHGAP28Q9P2N2 729 aa11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 MORC2Q9Y6X9 1032 aaPredicted RBP11.33□□□□□ -0.6
CCDC88C-206ENST00000553437 NLRC5Q86WI3 1866 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 ZMYM2Q9UBW7 1377 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 NPHP3-ACAD11A0A0J9YXS1 232 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 C2orf71A6NGG8 1288 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 CCDC169A6NNP5 214 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 K7ERI5 159 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 NRP1O14786 923 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 EFEMP2O95967 443 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 ALDH2P05091 517 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 SSBP05455 408 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 LIG1P18858 919 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 PLCG1P19174 1290 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 RBM10P98175 930 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 RAD51AP2Q09MP3 1159 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 DMP1Q13316 513 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 KARSQ15046 597 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 PUS10Q3MIT2 529 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 TMEM184AQ6ZMB5 413 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 TMC7Q7Z402 723 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 HACE1Q8IYU2 909 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 VPS52Q8N1B4 723 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 SPIRE2Q8WWL2 714 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 CALML4Q96GE6 196 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 TMEM169Q96HH4 297 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 EPSTI1Q96J88 318 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 CDK5RAP3Q96JB5 506 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 CDCA3Q99618 268 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 CCSER1Q9C0I3 900 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 ZBP1Q9H171 429 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 CXCL16Q9H2A7 254 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 ZSCAN16Q9H4T2 348 aaPredicted RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 PTPRHQ9HD43 1115 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 ENTPD7Q9NQZ7 604 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 MARCH5Q9NX47 278 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 SNTG2Q9NY99 539 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 KCND2Q9NZV8 630 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 KLK14Q9P0G3 267 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 TNFSF13BQ9Y275 285 aa11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 SRPRBQ9Y5M8 271 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-206ENST00000553437 BRWD1Q9NSI6 2320 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 KIAA1671Q9BY89 1806 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 ABLIM1O14639 778 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 SLC16A4O15374 487 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 MBTPS2O43462 519 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CXCL14O95715 111 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CTSAP10619 480 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 PLS3P13797 630 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CEBPZQ03701 1054 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 SMC1AQ14683 1233 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 SLC39A14Q15043 492 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CLUL1Q15846 466 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 SPECC1Q5M775 1068 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 ATF7IP2Q5U623 682 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 HSCBQ8IWL3 235 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 FAM178BQ8IXR5 827 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 TMEM161BQ8NDZ6 487 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CLIC6Q96NY7 704 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 FAM193BQ96PV7 902 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 ACO2Q99798 780 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CD320Q9NPF0 282 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 KMT5AQ9NQR1 393 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 PARP2Q9UGN5 583 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 CD207Q9UJ71 328 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 BARX2Q9UMQ3 279 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 FAN1Q9Y2M0 1017 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 RBM19Q9Y4C8 960 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 IRAK3Q9Y616 596 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 PHLPP2Q6ZVD8 1323 aa11.31□□□□□ -0.6
CCDC88C-206ENST00000553437 F8W810 466 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 PTGESO14684 152 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 LILRB3O75022 631 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 CLASP2O75122 1294 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 RECQL4O94761 1208 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 MAPTP10636 758 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 PROZP22891 400 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 DDIT3P35638 169 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 NASPP49321 788 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 NDUFV1P49821 464 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 GRIK3Q13003 919 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 COASYQ13057 564 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 SMAD4Q13485 552 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 GIT2Q14161 759 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 MCM6Q14566 821 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 TMEM132AQ24JP5 1023 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 DCAF4L1Q3SXM0 396 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 TAS1R1Q7RTX1 841 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 GPBP1Q86WP2 473 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 RNF168Q8IYW5 571 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 AUTS2Q8WXX7 1259 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 RAD54LQ92698 747 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 KCNN1Q92952 543 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 REEP2Q9BRK0 252 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 ADPGKQ9BRR6 497 aa11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 TARS2Q9BW92 718 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 DAXXQ9UER7 740 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 PRG3Q9Y2Y8 225 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-206ENST00000553437 FSD2A1L4K1 749 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms