RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 SPRYD3Q8NCJ5 442 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 KCNN1Q92952 543 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 IGSF21Q96ID5 467 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 CLIC6Q96NY7 704 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 RPS6KC1Q96S38 1066 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 ACO2Q99798 780 aaKnown RBP16.86■□□□□ 0.29
SHMT2-204ENST00000553324 IGFLR1Q9H665 355 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 PARVGQ9HBI0 331 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 ENTPD7Q9NQZ7 604 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 CLDND1Q9NY35 253 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 TFIP11Q9UBB9 837 aaKnown RBP16.86■□□□□ 0.29
SHMT2-204ENST00000553324 FAM50BQ9Y247 325 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 REV3LO60673 3130 aa16.86■□□□□ 0.29
SHMT2-204ENST00000553324 NT5C1B-RDH14C9J2C7 533 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 SLC16A4O15374 487 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 DDHD2O94830 711 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 FAM13AO94988 1023 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 CSPG5O95196 566 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 BMP1P13497 986 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 AFF1P51825 1210 aaKnown RBP16.85■□□□□ 0.29
SHMT2-204ENST00000553324 ADAM15Q13444 863 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 SMC1AQ14683 1233 aaKnown RBP16.85■□□□□ 0.29
SHMT2-204ENST00000553324 USP49Q70CQ1 688 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 SV2BQ7L1I2 683 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 MYCT1Q8N699 235 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 EFHBQ8N7U6 833 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 MRPL43Q8N983 215 aaKnown RBP16.85■□□□□ 0.29
SHMT2-204ENST00000553324 TMEM161BQ8NDZ6 487 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 KCNG4Q8TDN1 519 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 TCHPQ9BT92 498 aa16.85■□□□□ 0.29
SHMT2-204ENST00000553324 COL4A4P53420 1690 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-204ENST00000553324 NLRC5Q86WI3 1866 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 TTLL13PA6NNM8 815 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 NRP1O14786 923 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 TBCAO75347 108 aaKnown RBP16.84■□□□□ 0.29
SHMT2-204ENST00000553324 NRIP1P48552 1158 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 SLC11A1P49279 550 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 SCNN1GP51170 649 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 ZNF131P52739 623 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 GRIK3Q13003 919 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 FOXD4L5Q5VV16 416 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-204ENST00000553324 ZPBP2Q6X784 338 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 RBM23Q86U06 439 aaKnown RBP16.84■□□□□ 0.29
SHMT2-204ENST00000553324 COLGALT2Q8IYK4 626 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 VPS52Q8N1B4 723 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 TMEM87AQ8NBN3 555 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 FOXD4L4Q8WXT5 416 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-204ENST00000553324 ZFP42Q96MM3 310 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 REEP2Q9BRK0 252 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 COLEC11Q9BWP8 271 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 COL25A1Q9BXS0 654 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-204ENST00000553324 SNTG2Q9NY99 539 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 DNAJB4Q9UDY4 337 aa16.84■□□□□ 0.29
SHMT2-204ENST00000553324 NPHP3-ACAD11A0A0J9YXS1 232 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 TRAK2O60296 914 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 CUTAO60888 179 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 TOM1L1O75674 476 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 CXCL14O95715 111 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 THP07101 528 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 SRGAP2BP0DMP2 458 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 MAPTP10636 758 aaKnown RBP16.83■□□□□ 0.28
SHMT2-204ENST00000553324 OR1G1P47890 313 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 YARSP54577 528 aaKnown RBP16.83■□□□□ 0.28
SHMT2-204ENST00000553324 NCKAP1LP55160 1127 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 DSC1Q08554 894 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 DUSP6Q16828 381 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 PLPP4Q5VZY2 271 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 HAUS6Q7Z4H7 955 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 GSTCDQ8NEC7 633 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 CCDC94Q9BW85 323 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-204ENST00000553324 TARS2Q9BW92 718 aaKnown RBP16.83■□□□□ 0.28
SHMT2-204ENST00000553324 LRRC27Q9C0I9 530 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 PTPRHQ9HD43 1115 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 TOPORSQ9NS56 1045 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-204ENST00000553324 MIOSQ9NXC5 875 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 KLK14Q9P0G3 267 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 SSX2IPQ9Y2D8 614 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 USP20Q9Y2K6 914 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 IRAK3Q9Y616 596 aa16.83■□□□□ 0.28
SHMT2-204ENST00000553324 RECQL4O94761 1208 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 BRD1O95696 1058 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 CTSAP10619 480 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 MCF2P10911 925 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 STAT6P42226 847 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 NDUFV1P49821 464 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 CACNB1Q02641 598 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-204ENST00000553324 ZNF568Q3ZCX4 644 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 EEF1DP3Q658K8 133 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 MPZL3Q6UWV2 235 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 TAS1R3Q7RTX0 852 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 ADGRD2Q7Z7M1 963 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 FAM178BQ8IXR5 827 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 LRRC15Q8TF66 581 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 ZHX3Q9H4I2 956 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 ATP6V1DQ9Y5K8 247 aa16.82■□□□□ 0.28
SHMT2-204ENST00000553324 PER2O15055 1255 aa16.81■□□□□ 0.28
SHMT2-204ENST00000553324 CLDN3O15551 220 aa16.81■□□□□ 0.28
SHMT2-204ENST00000553324 EDN1P05305 212 aa16.81■□□□□ 0.28
SHMT2-204ENST00000553324 PROZP22891 400 aa16.81■□□□□ 0.28
SHMT2-204ENST00000553324 LTBRP36941 435 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms