RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FAM187AA6NFU0 413 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SRRM3A6NNA2 597 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ATP9AO75110 1047 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 RTN2O75298 545 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 RAD17O75943 681 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 NUDT17P0C025 328 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 DLATP10515 647 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ADSSP30520 456 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 MXI1P50539 228 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 MRPS9P82933 396 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 FMO1Q01740 532 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 PDE4CQ08493 712 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SNX1Q13596 522 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 DHX34Q14147 1143 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SIX1Q15475 284 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ERMARDQ5T6L9 678 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 DENND2CQ68D51 928 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 C11orf63Q6NUN7 778 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC121Q6ZUS5 278 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 KRT27Q7Z3Y8 459 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 KCTD17Q8N5Z5 321 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 UBL4BQ8N7F7 174 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ZNF564Q8TBZ8 553 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CD101Q93033 1021 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 NAP1L3Q99457 506 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 FAM129AQ9BZQ8 928 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 TRIM7Q9C029 511 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 QTRT2Q9H974 415 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 KCND2Q9NZV8 630 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 LARSQ9P2J5 1176 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 HERC5Q9UII4 1024 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CCPG1Q9ULG6 757 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ARID2Q68CP9 1835 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ZNF536O15090 1300 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 C5orf60A6NFR6 353 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SPDYE2BA6NHP3 402 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 H0YIN7 160 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 PPIP5K2O43314 1243 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SPOPO43791 374 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 P4HBP07237 508 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SPDYE6P0CI01 402 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 PLS3P13797 630 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CREB1P16220 341 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CHRNA3P32297 505 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 IFNAR2P48551 515 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 HADHBP55084 474 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SETQ01105 290 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 RASA3Q14644 834 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ANKRD20A8PQ5CZ79 823 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC105Q8IYK2 499 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CACNA2D3Q8IZS8 1091 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CHURC1Q8WUH1 139 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 C1orf54Q8WWF1 131 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ATXN2LQ8WWM7 1075 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 AKT1S1Q96B36 256 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ZNF653Q96CK0 615 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ACCSQ96QU6 501 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 HERPUD2Q9BSE4 406 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 PI4K2AQ9BTU6 479 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 DDX23Q9BUQ8 820 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC113Q9H0I3 377 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 SLC40A1Q9NP59 571 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 DNAJC17Q9NVM6 304 aaKnown RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 HAUS2Q9NVX0 235 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ZNF70Q9UC06 446 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 ASTN2O75129 1339 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-213ENST00000552720 MIF4GDA9UHW6 222 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TP73O15350 636 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 RGS16O15492 202 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CLDN3O15551 220 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 RIPK2O43353 540 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CYP11B1P15538 503 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 EIF2AK2P19525 551 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 IBSPP21815 317 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 YWHABP31946 246 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 COILP38432 576 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 EIF3BP55884 814 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 SNRNP35Q16560 246 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TKFCQ3LXA3 575 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 FAM102BQ5T8I3 360 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 SEL1L2Q5TEA6 688 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 OTUD6AQ7L8S5 288 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 HOOK3Q86VS8 718 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 SLC13A5Q86YT5 568 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 FAM71AQ8IYT1 594 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 ATG4AQ8WYN0 398 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CHMP6Q96FZ7 201 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC114Q96M63 670 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 PWWP2AQ96N64 755 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 ZNF317Q96PQ6 595 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 RIT2Q99578 217 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 PRMT1Q99873 361 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TMEM206Q9H813 350 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 PCYOX1Q9UHG3 505 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 RASAL2Q9UJF2 1139 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 USP20Q9Y2K6 914 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TELO2Q9Y4R8 837 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 COL11A1P12107 1806 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC169A6NNP5 214 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 C21orf2O43822 256 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms