RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ATN1P54259 1190 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 STX17P56962 302 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 FAM189BP81408 668 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 DCAF4L1Q3SXM0 396 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 XKR4Q5GH76 650 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 UBXN11Q5T124 520 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 ARMCX5Q6P1M9 558 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 SLC27A1Q6PCB7 646 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 SARM1Q6SZW1 724 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 CATSPER4Q7RTX7 472 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 APBB1IPQ7Z5R6 666 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 MRPL10Q7Z7H8 261 aaKnown RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 LUZP1Q86V48 1076 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 FAM114A1Q8IWE2 563 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 GPD1LQ8N335 351 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 AOPEPQ8N6M6 819 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 VWCEQ96DN2 955 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 ZBTB45Q96K62 511 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 CBWD1Q9BRT8 395 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 FTHL17Q9BXU8 183 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 WNT8AQ9H1J5 351 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 IKZF4Q9H2S9 585 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 HIPK3Q9H422 1215 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 PDZD7Q9H5P4 517 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 SAMSN1Q9NSI8 373 aaKnown RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 FANCLQ9NW38 375 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 HSPBP1Q9NZL4 362 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 LIMA1Q9UHB6 759 aaKnown RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 CPSF3Q9UKF6 684 aaKnown RBP10.46□□□□□ -0.73
LIMA1-211ENST00000552338 PADI3Q9ULW8 664 aa10.46□□□□□ -0.73
LIMA1-211ENST00000552338 A0A0U1RQF3 1178 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 CLIC2O15247 247 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 INPPL1O15357 1258 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 NBNO60934 754 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 AKAP3O75969 853 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 PFKMP08237 780 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 GRM5P41594 1212 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 PPP2R3AQ06190 1150 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 GSE1Q14687 1217 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 NOLC1Q14978 699 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIMA1-211ENST00000552338 TCP11X2Q5H9J9 407 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 EEF1DP3Q658K8 133 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 SMYD5Q6GMV2 418 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 ALKAL1Q6UXT8 129 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 TRIM59Q8IWR1 403 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 CD302Q8IX05 232 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 CRIPAKQ8N1N5 446 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 TMC2Q8TDI7 906 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 RSPH1Q8WYR4 309 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 POMGNT1Q8WZA1 660 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 ZNF668Q96K58 619 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-211ENST00000552338 SCLT1Q96NL6 688 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 ADPGKQ9BRR6 497 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 OSBPL7Q9BZF2 842 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 CDT1Q9H211 546 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 TMX1Q9H3N1 280 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 PLEKHA5Q9HAU0 1116 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 RGS18Q9NS28 235 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 AGO2Q9UKV8 859 aaKnown RBP10.45□□□□□ -0.74
LIMA1-211ENST00000552338 FRMD4BQ9Y2L6 1034 aa10.45□□□□□ -0.74
LIMA1-211ENST00000552338 TRIM43BA6NCK2 446 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 ZNF233A6NK53 670 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 TISP43B9A030 160 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 GOLGA6L19H0YKK7 550 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 CSDE1O75534 798 aaKnown RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 EOMESO95936 686 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 CLTAP09496 248 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 SKIP12755 728 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 CASP4P49662 377 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 RAB27AP51159 221 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 TPM4P67936 248 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 PSMD6Q15008 389 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 SURF1Q15526 300 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 MFSD5Q6N075 450 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 INTS8Q75QN2 995 aaKnown RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 RTN4RL1Q86UN2 441 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 NT5DC4Q86YG4 428 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 PARD3BQ8TEW8 1205 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 TRIM43Q96BQ3 446 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 BICD1Q96G01 975 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 HTATIP2Q9BUP3 242 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 IFIH1Q9BYX4 1025 aaKnown RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 TSPYL2Q9H2G4 693 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 ASB7Q9H672 318 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 ELAC1Q9H777 363 aaKnown RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 C1orf112Q9NSG2 853 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 TMEM39AQ9NV64 488 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 ATP11BQ9Y2G3 1177 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 USP20Q9Y2K6 914 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 SSUH2Q9Y2M2 353 aa10.44□□□□□ -0.74
LIMA1-211ENST00000552338 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-211ENST00000552338 TDRD15B5MCY1 1934 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 UMODL1Q5DID0 1318 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 TTC26A0AVF1 554 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 GTPBP10A4D1E9 387 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 C9IYK1 514 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 P4HA2O15460 535 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 EXOC3O60645 756 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 CTSHP09668 335 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 GHRP10912 638 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms