RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 RRP1BQ14684 758 aaKnown RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 MESDQ14696 234 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 VPS72Q15906 364 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 KCTD19Q17RG1 926 aaPredicted RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 FAM133BQ5BKY9 247 aaKnown RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 RNF207Q6ZRF8 634 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 FAM71AQ8IYT1 594 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 SYCP3Q8IZU3 236 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 CYP2W1Q8TAV3 490 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 ZNF564Q8TBZ8 553 aaPredicted RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 EPS8L1Q8TE68 723 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 CKAP2Q8WWK9 683 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 ARHGEF2Q92974 986 aaKnown RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 L3MBTL3Q96JM7 780 aaPredicted RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 WDR18Q9BV38 432 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 MTFR1LQ9H019 292 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 CCDC113Q9H0I3 377 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 EHMT1Q9H9B1 1298 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 NOP53Q9NZM5 478 aaKnown RBP9.39□□□□□ -0.91
TDP1-204ENST00000545686 PI4KBQ9UBF8 816 aa9.39□□□□□ -0.91
TDP1-204ENST00000545686 ADGRA3Q8IWK6 1321 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 TMEM120BA0PK00 339 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 KLRG2A4D1S0 409 aaPredicted RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 ANKRD63C9JTQ0 380 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 FSCN2O14926 492 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 SPOPO43791 374 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 NDUFB10O96000 172 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 CCND1P24385 295 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 SLCO1A2P46721 670 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 VAMP7P51809 220 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 CCDC15Q0P6D6 951 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 TBC1D1Q86TI0 1168 aaPredicted RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 PNMA8AQ86V59 439 aaPredicted RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 SIAH1Q8IUQ4 282 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 ARHGEF19Q8IW93 802 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 GRK7Q8WTQ7 553 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 C7orf43Q8WVR3 580 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 GRAMD1AQ96CP6 724 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 SNF8Q96H20 258 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 ZDHHC15Q96MV8 337 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 ECT2Q9H8V3 914 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 RXFP1Q9HBX9 757 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 KCNQ5Q9NR82 932 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 LGALS13Q9UHV8 139 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 AGAP1Q9UPQ3 857 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 COL2A1P02458 1487 aaPredicted RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 TCP11X1B4DZS4 312 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 PPEF1O14829 653 aaPredicted RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 GAS7O60861 476 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 WFS1O76024 890 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 SERPINB2P05120 415 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 BMP3P12645 472 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 CHRNB2P17787 502 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 NFIAQ12857 509 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 PTK6Q13882 451 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 UBAP2Q5T6F2 1119 aaKnown RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 VSTM1Q6UX27 236 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 SPATA21Q7Z572 469 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 PSPC1Q8WXF1 523 aaKnown RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 ANKRD27Q96NW4 1050 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 NUP85Q9BW27 656 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 MRIQ9BWK5 157 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 IDI2Q9BXS1 227 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 ARHGEF3Q9NR81 526 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 AAASQ9NRG9 546 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 FGFR1OP2Q9NVK5 253 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 PRKAG3Q9UGI9 489 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 DBR1Q9UK59 544 aaKnown RBP9.38□□□□□ -0.91
TDP1-204ENST00000545686 ACTL7BQ9Y614 415 aa9.38□□□□□ -0.91
TDP1-204ENST00000545686 ARHGEF35A5YM69 484 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 TP73O15350 636 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 TTC4O95801 387 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CHRM1P11229 460 aaPredicted RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 HOXA13P31271 388 aaPredicted RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 PSEN1P49768 467 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 ALDH5A1P51649 535 aaPredicted RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 MAP2K1Q02750 393 aaPredicted RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 KRT17Q04695 432 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 IKQ13123 557 aaPredicted RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 ACVR2BQ13705 512 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 RNF43Q68DV7 783 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 B3GNT9Q6UX72 402 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 FAM196AQ6ZSG2 479 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CCDC25Q86WR0 208 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 KSR1Q8IVT5 923 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 TBC1D31Q96DN5 1066 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 STAMBPL1Q96FJ0 436 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 PCDHB18PQ96TA0 734 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 PTPN22Q9Y2R2 807 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CD2APQ9Y5K6 639 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 TCRBV7S2A1N4TA0A589 114 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 K7ENM7 598 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 SORBS3O60504 671 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 HIP1RO75146 1068 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 GAS8O95995 478 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CCNB1P14635 433 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 PDE6BP35913 854 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CRKP46108 304 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 MXI1P50539 228 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 SCNN1DP51172 638 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms