RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CDX2Q99626 313 aaPredicted RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 CCDC94Q9BW85 323 aaPredicted RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 TARS2Q9BW92 718 aaKnown RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 MRPL9Q9BYD2 267 aaKnown RBP19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 PDZD7Q9H5P4 517 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 PTPRHQ9HD43 1115 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 DACH1Q9UI36 760 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 GIT1Q9Y2X7 761 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 STYXL1Q9Y6J8 313 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 MICAL3Q7RTP6 2002 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 TET1Q8NFU7 2136 aa19.16■□□□□ 0.66
CLSTN3-210ENST00000540931 PDXKO00764 312 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 PRR29P0C7W0 189 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 ITGA4P13612 1032 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 CASP1P29466 404 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 STK4Q13043 487 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 ZC2HC1CQ53FD0 456 aaPredicted RBP19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 C9orf50Q5SZB4 431 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 GLB1LQ6UWU2 654 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 RTN4RL1Q86UN2 441 aaPredicted RBP19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 CPB2Q96IY4 423 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 RAD9AQ99638 391 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 SEMA6BQ9H3T3 888 aa19.15■□□□□ 0.66
CLSTN3-210ENST00000540931 PSMA7O14818 248 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 B4GALT5O43286 388 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 CALUO43852 315 aaPredicted RBP19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 MGEA5O60502 916 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 GJB5O95377 273 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 MYBP10242 640 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 RPL13P26373 211 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 CAMK4Q16566 473 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 FOXR2Q6PJQ5 311 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 HERC6Q8IVU3 1022 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 CD302Q8IX05 232 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 GPT2Q8TD30 523 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 SCFD1Q8WVM8 642 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 OSBPL7Q9BZF2 842 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 PLEKHA5Q9HAU0 1116 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 TYW1Q9NV66 732 aaKnown RBP19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 MSRAQ9UJ68 235 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 RWDD3Q9Y3V2 267 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 PCDHA11Q9Y5I1 949 aa19.14■□□□□ 0.65
CLSTN3-210ENST00000540931 TTC3P53804 2025 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 A0A0B4J269 797 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 OGTO15294 1046 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 PRPF6O94906 941 aaKnown RBP19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 NPTXRO95502 500 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 CLTAP09496 248 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 GRM5P41594 1212 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 SMAD3P84022 425 aaKnown RBP19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 ZNF598Q86UK7 904 aaKnown RBP19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 C12orf56Q8IXR9 622 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 MLKLQ8NB16 471 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 URGCPQ8TCY9 931 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 POMGNT1Q8WZA1 660 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 DHTKD1Q96HY7 919 aaPredicted RBP19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 ACAP3Q96P50 834 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 TSG101Q99816 390 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 MSTO1Q9BUK6 570 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 TMEM117Q9H0C3 514 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 IPPQ9Y573 584 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 EYSQ5T1H1 3165 aa19.13■□□□□ 0.65
CLSTN3-210ENST00000540931 BICDL2A1A5D9 508 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 TLL1O43897 1013 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 CASP5P51878 434 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 MORC3Q14149 939 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 NFIL3Q16649 462 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 UBXN11Q5T124 520 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 ARMCX5Q6P1M9 558 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.12■□□□□ 0.653e-8■■■□□ 15.7
CLSTN3-210ENST00000540931 USP37Q86T82 979 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 CMTR2Q8IYT2 770 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 CRIPAKQ8N1N5 446 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 KIAA0895Q8NCT3 520 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 MAFAQ8NHW3 353 aaPredicted RBP19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 LINC01599Q8WXQ3 324 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 YME1L1Q96TA2 773 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 RSAD1Q9HA92 442 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 CXXC1Q9P0U4 656 aaPredicted RBP19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 ANKFY1Q9P2R3 1169 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 AGO2Q9UKV8 859 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 TRAF3IP3Q9Y228 551 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 TTC28Q96AY4 2481 aa19.12■□□□□ 0.65
CLSTN3-210ENST00000540931 INPPL1O15357 1258 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 DGKIO75912 1065 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 HTRA4P83105 476 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 LRRC63Q05C16 580 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 SURF1Q15526 300 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 EDRF1Q3B7T1 1238 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 SASS6Q6UVJ0 657 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 RBM43Q6ZSC3 357 aaKnown RBP19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 SLC9A9Q8IVB4 645 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 SAMD11Q96NU1 681 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 CDT1Q9H211 546 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 TTYH1Q9H313 450 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 AAASQ9NRG9 546 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 MAN1B1Q9UKM7 699 aa19.11■□□□□ 0.65
CLSTN3-210ENST00000540931 TMEM265A0A087WTH1 108 aa19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 XPOTO43592 962 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-210ENST00000540931 UPP2O95045 317 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms