RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 SLC39A4Q6P5W5 647 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 ZNF720Q7Z2F6 126 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 ZNF280BQ86YH2 543 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 ABI1Q8IZP0 508 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 GSTCDQ8NEC7 633 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 FBXO22Q8NEZ5 403 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 PGBD4Q96DM1 585 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 MRPL4Q9BYD3 311 aaKnown RBP17.3■□□□□ 0.36
RPAIN-206ENST00000539417 TRIM6Q9C030 488 aaPredicted RBP17.3■□□□□ 0.36
RPAIN-206ENST00000539417 TBC1D13Q9NVG8 400 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 PLAGL2Q9UPG8 496 aa17.3■□□□□ 0.36
RPAIN-206ENST00000539417 ARL5CA6NH57 179 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 ANKRD63C9JTQ0 380 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 HOXA2O43364 376 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 DDHD2O94830 711 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 POMCP01189 267 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 ASIC1P78348 528 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 GTF2BQ00403 316 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 STRN3Q13033 797 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 NOMO2Q5JPE7 1267 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 KCNN1Q92952 543 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 IPO9Q96P70 1041 aaKnown RBP17.29■□□□□ 0.36
RPAIN-206ENST00000539417 NRDE2Q9H7Z3 1164 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 RNF216Q9NWF9 866 aaPredicted RBP17.29■□□□□ 0.36
RPAIN-206ENST00000539417 DNAJB4Q9UDY4 337 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 GDAQ9Y2T3 454 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 PLXNA4Q9HCM2 1894 aa17.29■□□□□ 0.36
RPAIN-206ENST00000539417 ATG2AQ2TAZ0 1938 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 C5orf67F2Z3F1 127 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 GRM6O15303 877 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 KLRC4O43908 158 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 HARSP12081 509 aaKnown RBP17.28■□□□□ 0.36
RPAIN-206ENST00000539417 IGFBP4P22692 258 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 DNAJB1P25685 340 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 SCNN1GP51170 649 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 OSTNP61366 133 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 ZNF568Q3ZCX4 644 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 SPOUT1Q5T280 376 aaKnown RBP17.28■□□□□ 0.36
RPAIN-206ENST00000539417 CNNM4Q6P4Q7 775 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 GLB1LQ6UWU2 654 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 CEP57L1Q8IYX8 460 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 LRRC43Q8N309 656 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 KLHL23Q8NBE8 558 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 COLGALT1Q8NBJ5 622 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 CNNM3Q8NE01 707 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 ST6GALNAC4Q9H4F1 302 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 MRPL44Q9H9J2 332 aaKnown RBP17.28■□□□□ 0.36
RPAIN-206ENST00000539417 ALG13Q9NP73 1137 aaKnown RBP17.28■□□□□ 0.36
RPAIN-206ENST00000539417 ANKFY1Q9P2R3 1169 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 CACNG4Q9UBN1 327 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 PARP2Q9UGN5 583 aa17.28■□□□□ 0.36
RPAIN-206ENST00000539417 NT5C1B-RDH14C9J2C7 533 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 H3BNC9 293 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 RECQL4O94761 1208 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 CSPG5O95196 566 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 ITGB1P05556 798 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 FOSL2P15408 326 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 GAP43P17677 238 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 EHHADHQ08426 723 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 GPM6BQ13491 265 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 ZBTB41Q5SVQ8 909 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 MPZL3Q6UWV2 235 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 TMEM173Q86WV6 379 aaPredicted RBP17.27■□□□□ 0.36
RPAIN-206ENST00000539417 FMR1NBQ8N0W7 255 aaPredicted RBP17.27■□□□□ 0.36
RPAIN-206ENST00000539417 ENGASEQ8NFI3 743 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 GBP3Q9H0R5 595 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 MAGEF1Q9HAY2 307 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 KCNG1Q9UIX4 513 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 MTCH2Q9Y6C9 303 aa17.27■□□□□ 0.36
RPAIN-206ENST00000539417 PTGESO14684 152 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 INPPL1O15357 1258 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 PRPF6O94906 941 aaKnown RBP17.26■□□□□ 0.35
RPAIN-206ENST00000539417 ZNF202O95125 648 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 GCNT3O95395 438 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 PIGRP01833 764 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 AMPD3Q01432 767 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 SNW1Q13573 536 aaKnown RBP17.26■□□□□ 0.35
RPAIN-206ENST00000539417 CAMK1Q14012 370 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 DCAF4L1Q3SXM0 396 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 MAP4K3Q8IVH8 894 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 CCDC65Q8IXS2 484 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 THNSL1Q8IYQ7 743 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 TMEM130Q8N3G9 435 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 BCL7CQ8WUZ0 217 aaPredicted RBP17.26■□□□□ 0.35
RPAIN-206ENST00000539417 BICD1Q96G01 975 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 SAMD11Q96NU1 681 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 ADPGKQ9BRR6 497 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 OLFML3Q9NRN5 406 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 SEL1LQ9UBV2 794 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 GIT1Q9Y2X7 761 aa17.26■□□□□ 0.35
RPAIN-206ENST00000539417 F8W810 466 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 H0YCG3 227 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 ZC3H11AO75152 810 aaKnown RBP eCLIP17.25■□□□□ 0.35
RPAIN-206ENST00000539417 TOM1L1O75674 476 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 HOXD13P35453 343 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 SLC11A1P49279 550 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 BCAR1P56945 870 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 KCNT2Q6UVM3 1135 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 ZPBP2Q6X784 338 aa17.25■□□□□ 0.35
RPAIN-206ENST00000539417 KRBA2Q6ZNG9 492 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms