RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PES1O00541 588 aaKnown RBP13.07□□□□□ -0.32
CLIP1-208ENST00000537004 MAGEB2O15479 319 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 MGEA5O60502 916 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 P4HBP07237 508 aaKnown RBP13.07□□□□□ -0.32
CLIP1-208ENST00000537004 PAK2Q13177 524 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 TRIM14Q14142 442 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 EPHA7Q15375 998 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 TPH2Q8IWU9 490 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 USP38Q8NB14 1042 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 ZNF507Q8TCN5 953 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 HSD17B14Q9BPX1 270 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 TUFT1Q9NNX1 390 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 TBC1D7Q9P0N9 293 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 EVPLQ92817 2033 aa13.07□□□□□ -0.32
CLIP1-208ENST00000537004 A0A1W2PQC6 194 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 LINC01553A4QN01 128 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 KIF2AO00139 706 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 SLITRK3O94933 977 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 RPLP2P05387 115 aaKnown RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 MTIF2P46199 727 aaKnown RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 DNM2P50570 870 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 HERC4Q5GLZ8 1057 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 FOXR2Q6PJQ5 311 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 KCTD17Q8N5Z5 321 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 CCDC51Q96ER9 411 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 YME1L1Q96TA2 773 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 NAA15Q9BXJ9 866 aaKnown RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 FGFBP2Q9BYJ0 223 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 ADAMTS10Q9H324 1103 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 ST3GAL5Q9UNP4 418 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 INSL6Q9Y581 213 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 PRRC2BQ5JSZ5 2229 aaKnown RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 RPS6KA5O75582 802 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 EYA4O95677 639 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 FGFR1OPO95684 399 aaKnown RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 FGFR4P22455 802 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 TMOD1P28289 359 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 CRYBB1P53674 252 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 HTRA4P83105 476 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 GIT2Q14161 759 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 CCDC85BQ15834 202 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 FAM228AQ86W67 206 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 KSR1Q8IVT5 923 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 ZNF592Q92610 1267 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 CEP170P1Q96L14 293 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 GAS2L1Q99501 681 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-208ENST00000537004 TSG101Q99816 390 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 REEP2Q9BRK0 252 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 C17orf80Q9BSJ5 609 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 BHMT2Q9H2M3 363 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 CYP26B1Q9NR63 512 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 PPP2R2CQ9Y2T4 447 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 PAXBP1Q9Y5B6 917 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 CUL9Q8IWT3 2517 aa13.06□□□□□ -0.32
CLIP1-208ENST00000537004 MICAL3Q7RTP6 2002 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 ZSCAN12O43309 604 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 YWHABP31946 246 aaKnown RBP13.05□□□□□ -0.32
CLIP1-208ENST00000537004 GPC3P51654 580 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 ZCWPW2Q504Y3 356 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 MIIPQ5JXC2 388 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 LRRC55Q6ZSA7 311 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 MICALL1Q8N3F8 863 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 SLC17A8Q8NDX2 589 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 ZHX3Q9H4I2 956 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 ERVK-5Q9HDB9 667 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 SQORQ9Y6N5 450 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 IGKV6-21A0A0C4DH24 114 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 RNF225M0QZC1 329 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-208ENST00000537004 RIOK3O14730 519 aaKnown RBP13.05□□□□□ -0.32
CLIP1-208ENST00000537004 MAFO75444 373 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-208ENST00000537004 TOGARAM2Q6ZUX3 1019 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 REXO1L1PQ8IX06 675 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 C4orf19Q8IY42 314 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 GDPD5Q8WTR4 605 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 NLRP7Q8WX94 980 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 TMEM143Q96AN5 459 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 SCLT1Q96NL6 688 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 TSPYL2Q9H2G4 693 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-208ENST00000537004 ZSWIM4Q9H7M6 989 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 PRDM6Q9NQX0 595 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 ABHD10Q9NUJ1 306 aa13.05□□□□□ -0.32
CLIP1-208ENST00000537004 SOWAHDA6NJG2 315 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 KIF20AO95235 890 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 MUTP22033 750 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 FECHP22830 423 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 EIF4BP23588 611 aaKnown RBP13.04□□□□□ -0.32
CLIP1-208ENST00000537004 GATMP50440 423 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 RHPN2Q8IUC4 686 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 CRIPAKQ8N1N5 446 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 PIGOQ8TEQ8 1089 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 SCFD1Q8WVM8 642 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 ADAM2Q99965 735 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 RUSC1Q9BVN2 902 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 SUCLA2Q9P2R7 463 aaPredicted RBP13.04□□□□□ -0.32
CLIP1-208ENST00000537004 C5orf42Q9H799 3197 aa13.04□□□□□ -0.32
CLIP1-208ENST00000537004 ARID2Q68CP9 1835 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 A0A087WZ62 844 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 LPXNO60711 386 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 MTF1Q14872 753 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 XKR9Q5GH70 373 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms