RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 FXR1P51114 621 aaKnown RBP eCLIP23.08■■□□□ 1.28
VPS28-212ENST00000530836 MAPK6Q16659 721 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 NEK11Q8NG66 645 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 LMBR1Q8WVP7 490 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 FBXL18Q96ME1 805 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 MAP7D2Q96T17 732 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 MRPL4Q9BYD3 311 aaKnown RBP23.08■■□□□ 1.28
VPS28-212ENST00000530836 CCDC113Q9H0I3 377 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 MMRN2Q9H8L6 949 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 PYCARDQ9ULZ3 195 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 NR2E3Q9Y5X4 410 aa23.08■■□□□ 1.28
VPS28-212ENST00000530836 TTC26A0AVF1 554 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 TISP43B9A030 160 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 ARHGAP6O43182 974 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 N4BP1O75113 896 aaKnown RBP23.07■■□□□ 1.28
VPS28-212ENST00000530836 LDHAP00338 332 aaKnown RBP23.07■■□□□ 1.28
VPS28-212ENST00000530836 SRGAP2CP0DJJ0 459 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 CLCN3P51790 818 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 ZBED6P86452 979 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 SLC39A4Q6P5W5 647 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 IFNLR1Q8IU57 520 aaPredicted RBP23.07■■□□□ 1.28
VPS28-212ENST00000530836 GPD1LQ8N335 351 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 OR8K1Q8NGG5 319 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 ABHD10Q9NUJ1 306 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 TMEM39AQ9NV64 488 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 NOD1Q9Y239 953 aa23.07■■□□□ 1.28
VPS28-212ENST00000530836 SIP14410 1827 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 FECHP22830 423 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 PHKA2P46019 1235 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 VAMP7P51809 220 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 PTENP60484 403 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 SNRNP35Q16560 246 aaKnown RBP23.06■■□□□ 1.28
VPS28-212ENST00000530836 MARCH8Q5T0T0 291 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 GBP6Q6ZN66 633 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 TBX21Q9UL17 535 aa23.06■■□□□ 1.28
VPS28-212ENST00000530836 MBLAC1A4D2B0 266 aaPredicted RBP23.05■■□□□ 1.28
VPS28-212ENST00000530836 TRIM43BA6NCK2 446 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 P4HA2O15460 535 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 TREHO43280 583 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 KCNMA1Q12791 1236 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 TRIM43Q96BQ3 446 aaPredicted RBP23.05■■□□□ 1.28
VPS28-212ENST00000530836 NLRP4Q96MN2 994 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 DNAJC7Q99615 494 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 NUCKS1Q9H1E3 243 aaKnown RBP23.05■■□□□ 1.28
VPS28-212ENST00000530836 PLCB1Q9NQ66 1216 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 AKT3Q9Y243 479 aa23.05■■□□□ 1.28
VPS28-212ENST00000530836 TNRC18O15417 2968 aaPredicted RBP23.05■■□□□ 1.28
VPS28-212ENST00000530836 KIAA0355O15063 1070 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 EXTL3O43909 919 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 CYP2C9P11712 490 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 CETN1Q12798 172 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 PTK7Q13308 1070 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 EXOC3L4Q17RC7 722 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 SERINC5Q86VE9 423 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 TMEM139Q8IV31 216 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 ZNF710Q8N1W2 664 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 RDH13Q8NBN7 331 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 TMC2Q8TDI7 906 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 PRDM5Q9NQX1 630 aaPredicted RBP23.04■■□□□ 1.28
VPS28-212ENST00000530836 KCND1Q9NSA2 647 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 FAM207AQ9NSI2 230 aaPredicted RBP23.04■■□□□ 1.28
VPS28-212ENST00000530836 ZNHIT6Q9NWK9 470 aaKnown RBP23.04■■□□□ 1.28
VPS28-212ENST00000530836 DAAM1Q9Y4D1 1078 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 ACKR2O00590 384 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 PMM2O15305 246 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 TOM1L1O75674 476 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 PRKCBP05771 671 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 FMO5P49326 533 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 KLK7P49862 253 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 ZNF410Q86VK4 478 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 TMTC1Q8IUR5 882 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 MFSD14AQ96MC6 490 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 FZD8Q9H461 694 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 PRMT7Q9NVM4 692 aaPredicted RBP23.04■■□□□ 1.28
VPS28-212ENST00000530836 CEP72Q9P209 647 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 PRKAG2Q9UGJ0 569 aa23.04■■□□□ 1.28
VPS28-212ENST00000530836 AGO2Q9UKV8 859 aaKnown RBP23.04■■□□□ 1.28
VPS28-212ENST00000530836 SMIM35A0A1B0GVV1 85 aa23.03■■□□□ 1.28
VPS28-212ENST00000530836 ZNF233A6NK53 670 aa23.03■■□□□ 1.28
VPS28-212ENST00000530836 CCP110O43303 1012 aa23.03■■□□□ 1.28
VPS28-212ENST00000530836 GOLGA8FQ08AF8 430 aa23.03■■□□□ 1.28
VPS28-212ENST00000530836 GOLGA8DPQ0D2H9 430 aa23.03■■□□□ 1.28
VPS28-212ENST00000530836 FAM187BQ17R55 369 aa23.03■■□□□ 1.28
VPS28-212ENST00000530836 TARS2Q9BW92 718 aaKnown RBP23.03■■□□□ 1.28
VPS28-212ENST00000530836 A0A0B4J269 797 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 CYP26C1Q6V0L0 522 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 CACNA2D4Q7Z3S7 1137 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 CCDC155Q8N6L0 562 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 DHX38Q92620 1227 aaKnown RBP23.02■■□□□ 1.28
VPS28-212ENST00000530836 SAAL1Q96ER3 474 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 PRIMPOLQ96LW4 560 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 LSM14BQ9BX40 385 aaKnown RBP23.02■■□□□ 1.28
VPS28-212ENST00000530836 FBXL5Q9UKA1 691 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 ZMYND8Q9ULU4 1186 aaPredicted RBP23.02■■□□□ 1.28
VPS28-212ENST00000530836 ALPK3Q96L96 1907 aa23.02■■□□□ 1.28
VPS28-212ENST00000530836 INO80B-WBP1J3KQ70 363 aa23.01■■□□□ 1.27
VPS28-212ENST00000530836 CLDN3O15551 220 aa23.01■■□□□ 1.27
VPS28-212ENST00000530836 GTF2H1P32780 548 aa23.01■■□□□ 1.27
VPS28-212ENST00000530836 TAF2Q6P1X5 1199 aa23.01■■□□□ 1.27
VPS28-212ENST00000530836 CBWD2Q8IUF1 395 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms