RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 LILRB3O75022 631 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 TADA2AO75478 443 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 BRD1O95696 1058 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 ADH1AP07327 375 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 SPATA31D3P0C874 917 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 GLUD2P49448 558 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 TTC38Q5R3I4 469 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 PADI6Q6TGC4 694 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 SPATA31D4Q6ZUB0 917 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 GPR149Q86SP6 731 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 PALB2Q86YC2 1186 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 PLCD3Q8N3E9 789 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 MCPH1Q8NEM0 835 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 DEPTORQ8TB45 409 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 ACSF2Q96CM8 615 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-204ENST00000529288 MAN1C1Q9NR34 630 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 PRMT7Q9NVM4 692 aaPredicted RBP14.39□□□□□ -0.11
CPSF1-204ENST00000529288 NOL7Q9UMY1 257 aaKnown RBP14.39□□□□□ -0.11
CPSF1-204ENST00000529288 SORCS3Q9UPU3 1222 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 USP20Q9Y2K6 914 aa14.39□□□□□ -0.11
CPSF1-204ENST00000529288 A0A1B0GUA9 196 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 TEX28O15482 410 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 AVPR2P30518 371 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 CCT6AP40227 531 aaKnown RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 RBM25P49756 843 aaKnown RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 PTPN5P54829 565 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 PRPF4BQ13523 1007 aaKnown RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 NBR1Q14596 966 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 CCDC149Q6ZUS6 474 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 HASPINQ8TF76 798 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 ZSCAN31Q96LW9 406 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 LLPHQ9BRT6 129 aaKnown RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 POLR3CQ9BUI4 534 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 NFKBIZQ9BYH8 718 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 FOXP1Q9H334 677 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-204ENST00000529288 SNTG2Q9NY99 539 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 CACNG4Q9UBN1 327 aa14.38□□□□□ -0.11
CPSF1-204ENST00000529288 CCDC195A0A1B0GUA6 201 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 N4BP3O15049 544 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 GLUD1P00367 558 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 PRKCBP05771 671 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 HMGN5P82970 282 aaKnown RBP14.37□□□□□ -0.11
CPSF1-204ENST00000529288 DSC1Q08554 894 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 MAPK6Q16659 721 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 KIAA0319Q5VV43 1072 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 FUT10Q6P4F1 479 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 ELMSAN1Q6PJG2 1045 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 OTOP3Q7RTS5 596 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 NOSTRINQ8IVI9 506 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 UBALD2Q8IYN6 164 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 ZDHHC14Q8IZN3 488 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 RIN2Q8WYP3 895 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-204ENST00000529288 BSNDQ8WZ55 320 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 PHOX2BQ99453 314 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 GPR62Q9BZJ7 368 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 C2orf40Q9H1Z8 148 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 MFSD1Q9H3U5 465 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 PIDD1Q9HB75 910 aa14.37□□□□□ -0.11
CPSF1-204ENST00000529288 CASTOR2A6NHX0 329 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 TTLL13PA6NNM8 815 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 INPPL1O15357 1258 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 RFPL2O75678 378 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 RPL17P18621 184 aaKnown RBP14.36□□□□□ -0.11
CPSF1-204ENST00000529288 CYP11B2P19099 503 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 RPA1P27694 616 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 GBP2P32456 591 aaPredicted RBP14.36□□□□□ -0.11
CPSF1-204ENST00000529288 GRIK3Q13003 919 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 USP41Q3LFD5 358 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 HAUS3Q68CZ6 603 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 PPP4R3CPQ6ZMV5 832 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 CEP57Q86XR8 500 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 GSTCDQ8NEC7 633 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 FBXO18Q8NFZ0 1043 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 IFT74Q96LB3 600 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 PRIMPOLQ96LW4 560 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 PRRX2Q99811 253 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 ADPGKQ9BRR6 497 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 KIFC3Q9BVG8 833 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 FZD8Q9H461 694 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 PDZD7Q9H5P4 517 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 FAM86C1Q9NVL1 165 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 LRWD1Q9UFC0 647 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 DPP7Q9UHL4 492 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 ADAM28Q9UKQ2 775 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 KIAA1024Q9UPX6 916 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 USTQ9Y2C2 406 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 GDAQ9Y2T3 454 aa14.36□□□□□ -0.11
CPSF1-204ENST00000529288 DSG1Q02413 1049 aa14.35□□□□□ -0.11
CPSF1-204ENST00000529288 ORC2Q13416 577 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 HSP90AA2PQ14568 343 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 ECM1Q16610 540 aa14.35□□□□□ -0.11
CPSF1-204ENST00000529288 CDCA2Q69YH5 1023 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 PRSS55Q6UWB4 352 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 SMG7Q92540 1137 aaKnown RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 PAAF1Q9BRP4 392 aa14.35□□□□□ -0.11
CPSF1-204ENST00000529288 BHMT2Q9H2M3 363 aa14.35□□□□□ -0.11
CPSF1-204ENST00000529288 RXFP1Q9HBX9 757 aa14.35□□□□□ -0.11
CPSF1-204ENST00000529288 SH2B1Q9NRF2 756 aaPredicted RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 DDX19AQ9NUU7 478 aaKnown RBP14.35□□□□□ -0.11
CPSF1-204ENST00000529288 TRIOO75962 3097 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms