RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 OFD1O75665 1012 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 GJB5O95377 273 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 EOMESO95936 686 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 ADRB2P07550 413 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 FGFR1P11362 822 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 MYOGP15173 224 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 PBX2P40425 430 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 RABGGTBP53611 331 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 WNT7BP56706 349 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 STRN3Q13033 797 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 ALCAMQ13740 583 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 KNOP1Q1ED39 458 aaKnown RBP11.8□□□□□ -0.52
NEDD8-205ENST00000527046 XKR4Q5GH76 650 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 TWF2Q6IBS0 349 aaKnown RBP11.8□□□□□ -0.52
NEDD8-205ENST00000527046 MPZL3Q6UWV2 235 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 SPRED2Q7Z698 418 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 ZBTB33Q86T24 672 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 HERC6Q8IVU3 1022 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 NELFCDQ8IXH7 590 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 MYOCDQ8IZQ8 938 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 ADSSL1Q8N142 457 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 GUF1Q8N442 669 aaKnown RBP11.8□□□□□ -0.52
NEDD8-205ENST00000527046 TMEM174Q8WUU8 243 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 CCDC51Q96ER9 411 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 RNPC3Q96LT9 517 aaKnown RBP11.8□□□□□ -0.52
NEDD8-205ENST00000527046 CBWD1Q9BRT8 395 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 NUP62CLQ9H1M0 184 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 NXF3Q9H4D5 531 aaKnown RBP11.8□□□□□ -0.52
NEDD8-205ENST00000527046 SNTG2Q9NY99 539 aa11.8□□□□□ -0.52
NEDD8-205ENST00000527046 YBX2Q9Y2T7 364 aaKnown RBP11.8□□□□□ -0.52
NEDD8-205ENST00000527046 LCHNA4D1U4 455 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 ZBBXA8MT70 800 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 SOX1O00570 391 aaPredicted RBP11.79□□□□□ -0.52
NEDD8-205ENST00000527046 UPP2O95045 317 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 SMC2O95347 1197 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 MBD3O95983 291 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 MCF2P10911 925 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 ATP2A2P16615 1042 aaKnown RBP11.79□□□□□ -0.52
NEDD8-205ENST00000527046 AKAP5P24588 427 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 TNFSF9P41273 254 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 MCCD1P59942 119 aaPredicted RBP11.79□□□□□ -0.52
NEDD8-205ENST00000527046 NAB2Q15742 525 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 KLHL40Q2TBA0 621 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 SLC10A6Q3KNW5 377 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 SCARA3Q6AZY7 606 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 CENPPQ6IPU0 288 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 NPAS4Q8IUM7 802 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 TMEM130Q8N3G9 435 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 SP7Q8TDD2 431 aaPredicted RBP11.79□□□□□ -0.52
NEDD8-205ENST00000527046 FBXL18Q96ME1 805 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 SLC9A7Q96T83 725 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 GZF1Q9H116 711 aaPredicted RBP11.79□□□□□ -0.52
NEDD8-205ENST00000527046 HCSTQ9UBK5 93 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 CPSF3Q9UKF6 684 aaKnown RBP11.79□□□□□ -0.52
NEDD8-205ENST00000527046 TRAF3IP3Q9Y228 551 aa11.79□□□□□ -0.52
NEDD8-205ENST00000527046 ANK1P16157 1881 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-205ENST00000527046 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-205ENST00000527046 A0A1W2PPC1 479 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 PDXKO00764 312 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 PTGESO14684 152 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 HNRNPDLO14979 420 aaKnown RBP11.78□□□□□ -0.52
NEDD8-205ENST00000527046 CLIC2O15247 247 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 CLDN3O15551 220 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 AMHP03971 560 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 IGFBP6P24592 240 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-205ENST00000527046 ABCD1P33897 745 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 GRM5P41594 1212 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 LIG4P49917 911 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 LRIT3Q3SXY7 679 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 ZNF568Q3ZCX4 644 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 ANKRD40Q6AI12 368 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 FAM117BQ6P1L5 589 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 C12orf56Q8IXR9 622 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 THNSL1Q8IYQ7 743 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 ZMAT2Q96NC0 199 aaKnown RBP11.78□□□□□ -0.52
NEDD8-205ENST00000527046 FUCA2Q9BTY2 467 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 PBX4Q9BYU1 374 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 GBP3Q9H0R5 595 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 TMEM206Q9H813 350 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 AGPAT3Q9NRZ7 376 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 RMND1Q9NWS8 449 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 PLAGL2Q9UPG8 496 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 UBE4BO95155 1302 aa11.78□□□□□ -0.52
NEDD8-205ENST00000527046 RANBP2P49792 3224 aaKnown RBP11.77□□□□□ -0.52
NEDD8-205ENST00000527046 SLC34A2O95436 690 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 STAG3L1P0CL83 205 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 GARTP22102 1010 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 ACOT2P49753 483 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 RAB27AP51159 221 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 OSTNP61366 133 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 NCBP1Q09161 790 aaKnown RBP11.77□□□□□ -0.53
NEDD8-205ENST00000527046 ZBTB6Q15916 424 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 ENOX2Q16206 610 aaKnown RBP11.77□□□□□ -0.53
NEDD8-205ENST00000527046 NFIL3Q16649 462 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 DCAF4L1Q3SXM0 396 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 SLC9A9Q8IVB4 645 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 ZC3H3Q8IXZ2 948 aaKnown RBP11.77□□□□□ -0.53
NEDD8-205ENST00000527046 TRIML1Q8N9V2 468 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 PLEKHO2Q8TD55 490 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms