RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FBXO41Q8TF61 875 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 SPIRE2Q8WWL2 714 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 KIFAP3Q92845 792 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 NTPCRQ9BSD7 190 aaKnown RBP22.85■■□□□ 1.25
VPS28-205ENST00000526204 PAGR1Q9BTK6 254 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 ZDHHC18Q9NUE0 388 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 PCYOX1Q9UHG3 505 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 PODXLO00592 558 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 CYP26A1O43174 497 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 CYP1A2P05177 515 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 COMTP21964 271 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 PEX5P50542 639 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 ENPEPQ07075 957 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 MESDQ14696 234 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 RUNDC3BQ96NL0 473 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 SENP7Q9BQF6 1050 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 KMT5AQ9NQR1 393 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 UVRAGQ9P2Y5 699 aa22.85■■□□□ 1.25
VPS28-205ENST00000526204 ANKRD63C9JTQ0 380 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 ANKRD65E5RJM6 399 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 MAFGO15525 162 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 CTNNA2P26232 953 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 ODF2Q5BJF6 829 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 PLA2G4FQ68DD2 849 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 MICALCLQ6ZW33 695 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 FBXL13Q8NEE6 735 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 KRT35Q92764 455 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 GLG1Q92896 1179 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 NT5C1BQ96P26 610 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 MOV10L1Q9BXT6 1211 aaKnown RBP22.84■■□□□ 1.25
VPS28-205ENST00000526204 GTF3C4Q9UKN8 822 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 ATP8A1Q9Y2Q0 1164 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 PCDHA10Q9Y5I2 948 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 TESPA1A2RU30 521 aaPredicted RBP22.84■■□□□ 1.25
VPS28-205ENST00000526204 DENND3A2RUS2 1198 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 TMEM110-MUSTN1A8MSY1 372 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 DKC1O60832 514 aaKnown RBP eCLIP22.84■■□□□ 1.25
VPS28-205ENST00000526204 FAM107AO95990 144 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 FMO1Q01740 532 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 IFFO1Q0D2I5 559 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 TADA2BQ86TJ2 420 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 NLRX1Q86UT6 975 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 SLC47A2Q86VL8 602 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 HELQQ8TDG4 1101 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 SEMA4DQ92854 862 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 CD101Q93033 1021 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 CCDC127Q96BQ5 260 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 MFSD14AQ96MC6 490 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 FBXL18Q96ME1 805 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 BCCIPQ9P287 314 aaKnown RBP eCLIP22.84■■□□□ 1.25
VPS28-205ENST00000526204 PARP2Q9UGN5 583 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 MTUS1Q9ULD2 1270 aa22.84■■□□□ 1.25
VPS28-205ENST00000526204 KIAA0391O15091 583 aaKnown RBP22.83■■□□□ 1.25
VPS28-205ENST00000526204 CYP11B1P15538 503 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 PDE6CP51160 858 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 CDR2Q01850 454 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 EN1Q05925 392 aaPredicted RBP22.83■■□□□ 1.25
VPS28-205ENST00000526204 ANO5Q75V66 913 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 PRELID2Q8N945 189 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 C3orf20Q8ND61 904 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 MAGOHBQ96A72 148 aaKnown RBP22.83■■□□□ 1.25
VPS28-205ENST00000526204 GPRASP2Q96D09 838 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 SAAL1Q96ER3 474 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 TEPSINQ96N21 525 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 RAB20Q9NX57 234 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 SLC12A6Q9UHW9 1150 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 TRPC6Q9Y210 931 aa22.83■■□□□ 1.25
VPS28-205ENST00000526204 MMEP08473 750 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 KCNA3P22001 575 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 CCND2P30279 289 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 COPB2P35606 906 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 PTGIRP43119 386 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 PPP2R2AP63151 447 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 KRT71Q3SY84 523 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 TRMT1LQ7Z2T5 733 aaKnown RBP22.82■■□□□ 1.24
VPS28-205ENST00000526204 NLRP14Q86W24 1093 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 ZNF564Q8TBZ8 553 aaPredicted RBP22.82■■□□□ 1.24
VPS28-205ENST00000526204 CCT8L2Q96SF2 557 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 TMEM51Q9NW97 253 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 GGA2Q9UJY4 613 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 FAM170AA1A519 330 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 CPP00450 1065 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 DPEP1P16444 411 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 CIAPIN1Q6FI81 312 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 NSMFQ6X4W1 530 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 HOOK3Q86VS8 718 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 MYCBPAPQ8TBZ2 947 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 ZNF473Q8WTR7 871 aaKnown RBP22.82■■□□□ 1.24
VPS28-205ENST00000526204 ATP6V0A1Q93050 837 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 FAM81BQ96LP2 452 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 NUP85Q9BW27 656 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 PABPC3Q9H361 631 aaKnown RBP22.82■■□□□ 1.24
VPS28-205ENST00000526204 RPAP3Q9H6T3 665 aaPredicted RBP22.82■■□□□ 1.24
VPS28-205ENST00000526204 PCDHA3Q9Y5H8 950 aa22.82■■□□□ 1.24
VPS28-205ENST00000526204 SPOPO43791 374 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 NUDT17P0C025 328 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 CYP1B1Q16678 543 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 ENOSF1Q7L5Y1 443 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 VSIG10LQ86VR7 867 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 C18orf8Q96DM3 657 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms