RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 PCDHA3Q9Y5H8 950 aa11.92□□□□□ -0.5
HDAC9-228ENST00000524023 C5orf60A6NFR6 353 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 C21orf2O43822 256 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CYP1A2P05177 515 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 MMEP08473 750 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 PYGMP11217 842 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ALAS1P13196 640 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ADSSP30520 456 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 GBP1P32455 592 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 MFAP3P55082 362 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 GHRHRQ02643 423 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 MTMR1Q13613 665 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 BYSLQ13895 437 aaKnown RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 SNRNP35Q16560 246 aaKnown RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 UGCGQ16739 394 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 FKBP1CQ5VVH2 108 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ICE2Q659A1 982 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 DENND2CQ68D51 928 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CCDC137Q6PK04 289 aaKnown RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CBWD2Q8IUF1 395 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 C4orf19Q8IY42 314 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 OGFOD1Q8N543 542 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 PRPF38AQ8NAV1 312 aaKnown RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ZNF564Q8TBZ8 553 aaPredicted RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 IWS1Q96ST2 819 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 NUP85Q9BW27 656 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 TBC1D22BQ9NU19 505 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 TCRBV7S2A1N4TA0A589 114 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ANKRD63C9JTQ0 380 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ASNSP08243 561 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 HNRNPH1P31943 449 aaKnown RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CYP1B1Q16678 543 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CPNE8Q86YQ8 564 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 SLC13A5Q86YT5 568 aaPredicted RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 SUGP1Q8IWZ8 645 aaKnown RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 SYTL5Q8TDW5 730 aaPredicted RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CENPTQ96BT3 561 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 PGM2Q96G03 612 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 BTBD6Q96KE9 485 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 PARP2Q9UGN5 583 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 PNMA2Q9UL42 364 aa11.91□□□□□ -0.5
HDAC9-228ENST00000524023 ZBTB12Q9Y330 459 aaPredicted RBP11.91□□□□□ -0.5
HDAC9-228ENST00000524023 CCDC169A6NNP5 214 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 SPOPO43791 374 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 CYP11B1P15538 503 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 COILP38432 576 aaPredicted RBP11.9□□□□□ -0.5
HDAC9-228ENST00000524023 SLC29A2Q14542 456 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 TBC1D10BQ4KMP7 808 aaPredicted RBP11.9□□□□□ -0.5
HDAC9-228ENST00000524023 FAM102BQ5T8I3 360 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 KRT39Q6A163 491 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 TRMT1LQ7Z2T5 733 aaKnown RBP11.9□□□□□ -0.5
HDAC9-228ENST00000524023 ARMC9Q7Z3E5 817 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 FAM83AQ86UY5 434 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 CPXCR1Q8N123 301 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 SLC17A8Q8NDX2 589 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 MDM1Q8TC05 714 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 HELQQ8TDG4 1101 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 PARD3BQ8TEW8 1205 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 TATDN2Q93075 761 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 ZNF653Q96CK0 615 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 SAAL1Q96ER3 474 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 SEC16BQ96JE7 1060 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 ZNF341Q9BYN7 854 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 MTRF1LQ9UGC7 380 aaKnown RBP11.9□□□□□ -0.5
HDAC9-228ENST00000524023 PGAP2Q9UHJ9 254 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 CNOT7Q9UIV1 285 aaKnown RBP11.9□□□□□ -0.5
HDAC9-228ENST00000524023 GTF3C4Q9UKN8 822 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 TBX20Q9UMR3 447 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 COQ4Q9Y3A0 265 aa11.9□□□□□ -0.5
HDAC9-228ENST00000524023 H0YHG0 523 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 EIF2AK2P19525 551 aaKnown RBP11.89□□□□□ -0.51
HDAC9-228ENST00000524023 GPC3P51654 580 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 CDR1P51861 262 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 PSMC5P62195 406 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 CDR2Q01850 454 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 ACTN3Q08043 901 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-228ENST00000524023 DRP2Q13474 957 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 SIX1Q15475 284 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-228ENST00000524023 XKR9Q5GH70 373 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 ERMARDQ5T6L9 678 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 KCNV1Q6PIU1 500 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 MAP4K3Q8IVH8 894 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 CCDC105Q8IYK2 499 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 TMEM161BQ8NDZ6 487 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 CCDC127Q96BQ5 260 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 RUNDC3BQ96NL0 473 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 XPO6Q96QU8 1125 aaKnown RBP11.89□□□□□ -0.51
HDAC9-228ENST00000524023 TAAR1Q96RJ0 339 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 POP1Q99575 1024 aaKnown RBP11.89□□□□□ -0.51
HDAC9-228ENST00000524023 SEMA4AQ9H3S1 761 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 TMEM8AQ9HCN3 771 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 UVRAGQ9P2Y5 699 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 MTUS1Q9ULD2 1270 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 EXOC7Q9UPT5 735 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 TLDC2A0PJX2 215 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 WDR46O15213 610 aaKnown RBP11.89□□□□□ -0.51
HDAC9-228ENST00000524023 ATP9AO75110 1047 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 RARAP10276 462 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 CNGA1P29973 690 aa11.89□□□□□ -0.51
HDAC9-228ENST00000524023 MMP13P45452 471 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms