RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 NUB1Q9Y5A7 615 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 NRXN2Q9P2S2 1712 aa6.49□□□□□ -1.37
NUP54-218ENST00000515460 AFDNP55196 1824 aaKnown RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 SLX4Q8IY92 1834 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 TCF20Q9UGU0 1960 aaKnown RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 MATN3O15232 486 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 NPHP1O15259 732 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 B4GALT3O60512 393 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 OFD1O75665 1012 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 PABPC1P11940 636 aaKnown RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 MLLT6P55198 1093 aaPredicted RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 IFRD2Q12894 506 aaPredicted RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 KIZQ2M2Z5 673 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 CCDC93Q567U6 631 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 SOGA3Q5TF21 947 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 NSMFQ6X4W1 530 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 RASAL3Q86YV0 1011 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 TDHQ8IZJ6 230 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.48□□□□□ -1.37
NUP54-218ENST00000515460 CLIC6Q96NY7 704 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 MYCBPQ99417 103 aaPredicted RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 TMEM168Q9H0V1 697 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 SMOC1Q9H4F8 434 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 ARHGEF4Q9NR80 690 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 MIS18AQ9NYP9 233 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 DTLQ9NZJ0 730 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 MYOTQ9UBF9 498 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 ZMYND8Q9ULU4 1186 aaPredicted RBP6.48□□□□□ -1.37
NUP54-218ENST00000515460 NIP7Q9Y221 180 aaKnown RBP eCLIP6.48□□□□□ -1.37
NUP54-218ENST00000515460 ZNF318Q5VUA4 2279 aa6.48□□□□□ -1.37
NUP54-218ENST00000515460 TCRBV5S2A0A599 114 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 PDPK1O15530 556 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 HTATSF1O43719 755 aaKnown RBP6.47□□□□□ -1.37
NUP54-218ENST00000515460 TADA3O75528 432 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 CYP7B1O75881 506 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 U2AF1L5P0DN76 240 aaPredicted RBP6.47□□□□□ -1.37
NUP54-218ENST00000515460 ZNF28P17035 718 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 PPP2R1AP30153 589 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 ALDH1B1P30837 517 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 U2AF1Q01081 240 aaKnown RBP eCLIP6.47□□□□□ -1.37
NUP54-218ENST00000515460 TAF7Q15545 349 aaPredicted RBP6.47□□□□□ -1.37
NUP54-218ENST00000515460 FAM109BQ6ICB4 259 aaPredicted RBP6.47□□□□□ -1.37
NUP54-218ENST00000515460 TEPPQ6URK8 271 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 CREBRFQ8IUR6 639 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 TRIM48Q8IWZ4 208 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 RTKN2Q8IZC4 609 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 TTC9BQ8N6N2 239 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 C2orf69Q8N8R5 385 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 CD99L2Q8TCZ2 262 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 RTF1Q92541 710 aaKnown RBP6.47□□□□□ -1.37
NUP54-218ENST00000515460 WRNIP1Q96S55 665 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 SSBP3Q9BWW4 388 aaPredicted RBP6.47□□□□□ -1.37
NUP54-218ENST00000515460 MSRB2Q9Y3D2 182 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 CEP83Q9Y592 693 aa6.47□□□□□ -1.37
NUP54-218ENST00000515460 NPEPPSL1A6NEC2 478 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 GOLIM4O00461 696 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 LAMTOR5O43504 91 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 AKAP8O43823 692 aaKnown RBP6.46□□□□□ -1.38
NUP54-218ENST00000515460 KIF1CO43896 1103 aaKnown RBP6.46□□□□□ -1.38
NUP54-218ENST00000515460 FSHBP01225 129 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 LRG1P02750 347 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 FOSL2P15408 326 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 GRK2P25098 689 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 GRK3P35626 688 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 IARSP41252 1262 aaKnown RBP6.46□□□□□ -1.38
NUP54-218ENST00000515460 RIPK4P57078 832 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 RASGRF1Q13972 1273 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 ACAP1Q15027 740 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 MTERF2Q49AM1 385 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 TMC5Q6UXY8 1006 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 LBX2Q6XYB7 198 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 TSHZ1Q6ZSZ6 1077 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 UBE2Q1Q7Z7E8 422 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 IFNL3Q8IZI9 196 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 SH3TC2Q8TF17 1288 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 DVL3Q92997 716 aaPredicted RBP6.46□□□□□ -1.38
NUP54-218ENST00000515460 MKL1Q969V6 931 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 CFAP53Q96M91 514 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 ASB2Q96Q27 587 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 SPATA9Q9BWV2 254 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 C1QTNF3Q9BXJ4 246 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 SLC6A20Q9NP91 592 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 JADE2Q9NQC1 790 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 PPP4R1LQ9P1A2 415 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 RBPJLQ9UBG7 517 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 NUDCQ9Y266 331 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 ZDHHC9Q9Y397 364 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 KIF3AQ9Y496 699 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 ZNF292O60281 2723 aa6.46□□□□□ -1.38
NUP54-218ENST00000515460 FSD2A1L4K1 749 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 C9orf118A6NHY6 69 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 ERVV-1B6SEH8 477 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 ZNF500O60304 480 aaPredicted RBP6.45□□□□□ -1.38
NUP54-218ENST00000515460 EIF4A1P60842 406 aaKnown RBP6.45□□□□□ -1.38
NUP54-218ENST00000515460 GPR85P60893 370 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 SPIRE1Q08AE8 756 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 SURF1Q15526 300 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 CRY2Q49AN0 593 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 SLC9C1Q4G0N8 1177 aa6.45□□□□□ -1.38
NUP54-218ENST00000515460 PHF19Q5T6S3 580 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms