RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 GNRHR2Q96P88 292 aa5.06□□□□□ -1.6
NUP54-212ENST00000513248 ASPSCR1Q9BZE9 553 aa5.06□□□□□ -1.6
NUP54-212ENST00000513248 OR10A2Q9H208 303 aa5.06□□□□□ -1.6
NUP54-212ENST00000513248 OAZ3Q9UMX2 235 aa5.06□□□□□ -1.6
NUP54-212ENST00000513248 VWA7Q9Y334 891 aa5.06□□□□□ -1.6
NUP54-212ENST00000513248 NPHP4O75161 1426 aaPredicted RBP5.06□□□□□ -1.6
NUP54-212ENST00000513248 SETD1BQ9UPS6 1966 aaKnown RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 ZC3H13Q5T200 1668 aaKnown RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 NUP155O75694 1391 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 RNF17Q9BXT8 1623 aaKnown RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 GABRDO14764 452 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 TOM1O60784 492 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 ZNF623O75123 536 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 GPR15P49685 360 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 GUCY2FP51841 1108 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 ADAM8P78325 824 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 KRT85P78386 507 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 PURAQ00577 322 aaKnown RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 HGFACQ04756 655 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 KLF1Q13351 362 aaPredicted RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 DGKDQ16760 1214 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 CCDC178Q5BJE1 867 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 IQSEC1Q6DN90 963 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 PALM2Q8IXS6 379 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 GIMAP8Q8ND71 665 aaPredicted RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 CFHR4Q92496 578 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 RPGRQ92834 1020 aaKnown RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 FDXACB1Q9BRP7 624 aaPredicted RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 ANO3Q9BYT9 981 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 OSBPL6Q9BZF3 934 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.05□□□□□ -1.6
NUP54-212ENST00000513248 C14orf119Q9NWQ9 140 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 PRSS50Q9UI38 385 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 FAM184BQ9ULE4 1060 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 CTDP1Q9Y5B0 961 aaPredicted RBP5.05□□□□□ -1.6
NUP54-212ENST00000513248 CROCC2H7BZ55 1655 aa5.05□□□□□ -1.6
NUP54-212ENST00000513248 STRCQ7RTU9 1775 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 CEP152O94986 1710 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 PMS2P1A4D2B8 440 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 MATN2O00339 956 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 KATNA1O75449 491 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 IDI1Q13907 227 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 BRDTQ58F21 947 aaPredicted RBP5.04□□□□□ -1.6
NUP54-212ENST00000513248 SPDYAQ5MJ70 313 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 SYDE2Q5VT97 1194 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 TCTN3Q6NUS6 607 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 TAX1BP1Q86VP1 789 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 OR14K1Q8NGZ2 314 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 DPYSL5Q9BPU6 564 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 ZNF277Q9NRM2 450 aaPredicted RBP5.04□□□□□ -1.6
NUP54-212ENST00000513248 SLC52A1Q9NWF4 448 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 DDX56Q9NY93 547 aaKnown RBP5.04□□□□□ -1.6
NUP54-212ENST00000513248 SAE1Q9UBE0 346 aaPredicted RBP5.04□□□□□ -1.6
NUP54-212ENST00000513248 PUF60Q9UHX1 559 aaKnown RBP5.04□□□□□ -1.6
NUP54-212ENST00000513248 MAGEL2Q9UJ55 1249 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 ADGRL2O95490 1459 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 ZNF142P52746 1687 aaPredicted RBP5.04□□□□□ -1.6
NUP54-212ENST00000513248 ARHGAP31Q2M1Z3 1444 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 ROCK1Q13464 1354 aa5.04□□□□□ -1.6
NUP54-212ENST00000513248 PRDM15P57071 1507 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 SCAF11Q99590 1463 aaKnown RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 hCG_2014768A0A024R1R8 64 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 FOXS1O43638 330 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 CDC14BO60729 498 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 RAB11FIP3O75154 756 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 CLEC2LP0C7M8 214 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 CR2P20023 1033 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 IBSPP21815 317 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 MTNR1BP49286 362 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 SESN2P58004 480 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 MRPS9P82933 396 aaKnown RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 EXOSC10Q01780 885 aaKnown RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 KLF10Q13118 480 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 DUSP8Q13202 625 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 HS1BP3Q53T59 392 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 CT83Q5H943 113 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 KLHDC10Q6PID8 442 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 GAREM2Q75VX8 874 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 CLEC14AQ86T13 490 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 Q8TCH9 128 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 EAF2Q96CJ1 260 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 CCDC8Q9H0W5 538 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 C12orf65Q9H3J6 166 aaKnown RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 HOMER2Q9NSB8 354 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 POLR3BQ9NW08 1133 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 EVLQ9UI08 416 aaPredicted RBP5.03□□□□□ -1.6
NUP54-212ENST00000513248 SCOCQ9UIL1 159 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 TRHDEQ9UKU6 1024 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 HS3ST3A1Q9Y663 406 aa5.03□□□□□ -1.6
NUP54-212ENST00000513248 TNKSO95271 1327 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 MROH1Q8NDA8 1641 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 A0A1W2PR48 441 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 C2orf78A6NCI8 922 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 GOLGA8AA7E2F4 631 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 GOLGA8BA8MQT2 603 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 H2AFYO75367 372 aaKnown RBP5.02□□□□□ -1.61
NUP54-212ENST00000513248 PCDH8O95206 1070 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 APOL3O95236 402 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 RBP3P10745 1247 aa5.02□□□□□ -1.61
NUP54-212ENST00000513248 IGBP1P78318 339 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms