RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 GPR182O15218 404 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 ERLIN2O94905 339 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PTMSP20962 102 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 EFNA5P52803 228 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 NCKAP1LP55160 1127 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 MBTD1Q05BQ5 628 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 DPYDQ12882 1025 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PNOCQ13519 176 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PLEKHG4Q58EX7 1191 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 SPRED2Q7Z698 418 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 ELOA2Q8IYF1 753 aaPredicted RBP11.03□□□□□ -0.64
NUP54-203ENST00000504173 DBF4BQ8NFT6 615 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 GPT2Q8TD30 523 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 APBB2Q92870 758 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 POP1Q99575 1024 aaKnown RBP11.03□□□□□ -0.64
NUP54-203ENST00000504173 MINDY3Q9H8M7 445 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 MRPL44Q9H9J2 332 aaKnown RBP11.03□□□□□ -0.64
NUP54-203ENST00000504173 ERVK-5Q9HDB9 667 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 EXOC1Q9NV70 894 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PRMT7Q9NVM4 692 aaPredicted RBP11.03□□□□□ -0.64
NUP54-203ENST00000504173 ARHGAP28Q9P2N2 729 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PADI3Q9ULW8 664 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 ST3GAL5Q9UNP4 418 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 PHLPP2Q6ZVD8 1323 aa11.03□□□□□ -0.64
NUP54-203ENST00000504173 DNAH14Q0VDD8 3507 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 DENND3A2RUS2 1198 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 RBAK-RBAKDNI3L0D1 243 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 K7ERI5 159 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 KLRC4O43908 158 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 SMC2O95347 1197 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 GCNT3O95395 438 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 RPN1P04843 607 aaKnown RBP11.02□□□□□ -0.65
NUP54-203ENST00000504173 PRKCBP05771 671 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 MAPTP10636 758 aaKnown RBP11.02□□□□□ -0.65
NUP54-203ENST00000504173 ACTN1P12814 892 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 NMT1P30419 496 aaKnown RBP11.02□□□□□ -0.65
NUP54-203ENST00000504173 NCBP1Q09161 790 aaKnown RBP11.02□□□□□ -0.65
NUP54-203ENST00000504173 STRN3Q13033 797 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 PCBP1Q15365 356 aaKnown RBP eCLIP11.02□□□□□ -0.65
NUP54-203ENST00000504173 CAMK4Q16566 473 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 MAPK6Q16659 721 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 TMEM132AQ24JP5 1023 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 KMT5BQ4FZB7 885 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 FAM26FQ5R3K3 315 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 CNKSR3Q6P9H4 555 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 HAUS6Q7Z4H7 955 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 RNF135Q8IUD6 432 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 TMEM161BQ8NDZ6 487 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 SMARCE1Q969G3 411 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 FIZ1Q96SL8 496 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 NTPCRQ9BSD7 190 aaKnown RBP11.02□□□□□ -0.65
NUP54-203ENST00000504173 CCDC113Q9H0I3 377 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 NUP62CLQ9H1M0 184 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 CLSTN2Q9H4D0 955 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 TMEM134Q9H6X4 195 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 OLFML3Q9NRN5 406 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 TET1Q8NFU7 2136 aa11.02□□□□□ -0.65
NUP54-203ENST00000504173 H3BQ06 376 aaPredicted RBP11.01□□□□□ -0.65
NUP54-203ENST00000504173 ZSCAN20P17040 1043 aaPredicted RBP11.01□□□□□ -0.65
NUP54-203ENST00000504173 SCP2P22307 547 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 ABCD1P33897 745 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 PRPF4BQ13523 1007 aaKnown RBP11.01□□□□□ -0.65
NUP54-203ENST00000504173 ALCAMQ13740 583 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 IKBKEQ14164 716 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 STXBP4Q6ZWJ1 553 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 ZNF720Q7Z2F6 126 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 ERCC4Q92889 916 aaPredicted RBP11.01□□□□□ -0.65
NUP54-203ENST00000504173 HPS3Q969F9 1004 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 PRIMPOLQ96LW4 560 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 FTHL17Q9BXU8 183 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 FZD8Q9H461 694 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 ST6GALNAC4Q9H4F1 302 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 AGPAT5Q9NUQ2 364 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 RMND1Q9NWS8 449 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 PIN4Q9Y237 131 aaKnown RBP11.01□□□□□ -0.65
NUP54-203ENST00000504173 USP24Q9UPU5 2620 aa11.01□□□□□ -0.65
NUP54-203ENST00000504173 ABHD14A-ACY1A0A1B0GW23 586 aa11□□□□□ -0.65
NUP54-203ENST00000504173 ACKR2O00590 384 aa11□□□□□ -0.65
NUP54-203ENST00000504173 B4GALT5O43286 388 aa11□□□□□ -0.65
NUP54-203ENST00000504173 TSPAN1O60635 241 aa11□□□□□ -0.65
NUP54-203ENST00000504173 RHOBTB3O94955 611 aa11□□□□□ -0.65
NUP54-203ENST00000504173 MYBP10242 640 aa11□□□□□ -0.65
NUP54-203ENST00000504173 AVPR2P30518 371 aa11□□□□□ -0.65
NUP54-203ENST00000504173 AXLP30530 894 aa11□□□□□ -0.65
NUP54-203ENST00000504173 CASP5P51878 434 aa11□□□□□ -0.65
NUP54-203ENST00000504173 VCPP55072 806 aaKnown RBP11□□□□□ -0.65
NUP54-203ENST00000504173 ERVK-21P61565 698 aa11□□□□□ -0.65
NUP54-203ENST00000504173 GTF2BQ00403 316 aa11□□□□□ -0.65
NUP54-203ENST00000504173 EHHADHQ08426 723 aa11□□□□□ -0.65
NUP54-203ENST00000504173 PSMD2Q13200 908 aa11□□□□□ -0.65
NUP54-203ENST00000504173 KCNB1Q14721 858 aa11□□□□□ -0.65
NUP54-203ENST00000504173 SMAD2Q15796 467 aaKnown RBP11□□□□□ -0.65
NUP54-203ENST00000504173 AMHR2Q16671 573 aa11□□□□□ -0.65
NUP54-203ENST00000504173 FAM187BQ17R55 369 aa11□□□□□ -0.65
NUP54-203ENST00000504173 TCTN1Q2MV58 587 aa11□□□□□ -0.65
NUP54-203ENST00000504173 ZC2HC1CQ53FD0 456 aaPredicted RBP11□□□□□ -0.65
NUP54-203ENST00000504173 TAS1R3Q7RTX0 852 aa11□□□□□ -0.65
NUP54-203ENST00000504173 DGLUCYQ7Z3D6 616 aa11□□□□□ -0.65
NUP54-203ENST00000504173 HVCN1Q96D96 273 aa11□□□□□ -0.65
NUP54-203ENST00000504173 PABPC5Q96DU9 382 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms