RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 POLR2AP24928 1970 aaKnown RBP12.92□□□□□ -0.34
NUP54-202ENST00000502850 A0A0G2JMZ2 1700 aa12.92□□□□□ -0.34
NUP54-202ENST00000502850 GBP1P32455 592 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 CARSP49589 748 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 PDE6CP51160 858 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 HMGCS2P54868 508 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 DEFB115Q30KQ5 88 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 XKR3Q5GH77 459 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 C1orf220Q5T0J3 134 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 ARHGEF19Q8IW93 802 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 RPUSD2Q8IZ73 545 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 PARD3BQ8TEW8 1205 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 CASKIN2Q8WXE0 1202 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 POMGNT1Q8WZA1 660 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 SHC3Q92529 594 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 RUNDC3BQ96NL0 473 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 GPRC5CQ9NQ84 441 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 CYP39A1Q9NYL5 469 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 SEPT9Q9UHD8 586 aaPredicted RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 GOLGA6L10A6NI86 522 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 SPATA31C2B4DYI2 1134 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 HNRNPDLO14979 420 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 SART1O43290 800 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 ADRB2P07550 413 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 HSPA9P38646 679 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 VEGFBP49765 207 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 PRKCEQ02156 737 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 CYP24A1Q07973 514 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 DGKZQ13574 1117 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 DHX34Q14147 1143 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 HLTFQ14527 1009 aaKnown RBP eCLIP12.91□□□□□ -0.34
NUP54-202ENST00000502850 PPP1R2P3Q6NXS1 205 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 LRIG3Q6UXM1 1119 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 PPM1KQ8N3J5 372 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 EPS8L1Q8TE68 723 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 ZC3H15Q8WU90 426 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 DHX38Q92620 1227 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 THAP2Q9H0W7 228 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 OSGEPQ9NPF4 335 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 CYP26B1Q9NR63 512 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 CTTNBP2NLQ9P2B4 639 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 UVRAGQ9P2Y5 699 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 FBXO40Q9UH90 709 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 RASAL2Q9UJF2 1139 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 ABT1Q9ULW3 272 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 UTP11Q9Y3A2 253 aaKnown RBP12.91□□□□□ -0.34
NUP54-202ENST00000502850 PPME1Q9Y570 386 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 RIPK3Q9Y572 518 aa12.91□□□□□ -0.34
NUP54-202ENST00000502850 FAM187AA6NFU0 413 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 BHMG1C9JSJ3 638 aaPredicted RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 DDX3YO15523 660 aaKnown RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 SHOX2O60902 331 aaPredicted RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 ERLIN2O94905 339 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 FTLP02792 175 aaPredicted RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 SUPT20HL2P0C7V6 817 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 ADSSP30520 456 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 ICAM3P32942 547 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 USP8P40818 1118 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 HIRAP54198 1017 aaPredicted RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 PTENP60484 403 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 ACTR2P61160 394 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 GCNT1Q02742 428 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 STRN3Q13033 797 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 TMEM132BQ14DG7 1078 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 STXBP2Q15833 593 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 SH3D19Q5HYK7 790 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 SPDYCQ5MJ68 293 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 COL13A1Q5TAT6 717 aaPredicted RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 ANGEL2Q5VTE6 544 aaKnown RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 SMYD5Q6GMV2 418 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 CBWD2Q8IUF1 395 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 EFCAB13Q8IY85 973 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 TRIM11Q96F44 468 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 BICD1Q96G01 975 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 RNPC3Q96LT9 517 aaKnown RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 PLVAPQ9BX97 442 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 WNT8AQ9H1J5 351 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 RAB20Q9NX57 234 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 ARHGAP28Q9P2N2 729 aa12.9□□□□□ -0.34
NUP54-202ENST00000502850 NOCTQ9UK39 431 aaKnown RBP12.9□□□□□ -0.34
NUP54-202ENST00000502850 SSC5DA1L4H1 1573 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 LCTP09848 1927 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 ZNF233A6NK53 670 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 TISP43B9A030 160 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 EXTL3O43909 919 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 FGGP02679 453 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 BPIFB4P59827 614 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 RNASE9P60153 205 aaKnown RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 CDR2Q01850 454 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 MAP2K1Q02750 393 aaPredicted RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 SEL1L2Q5TEA6 688 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 CST9Q5W186 159 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 SLFN12LQ6IEE8 588 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 SWSAP1Q6NVH7 229 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 ABHD15Q6UXT9 468 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 ZNF677Q86XU0 584 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 TSEN2Q8NCE0 465 aaKnown RBP12.89□□□□□ -0.35
NUP54-202ENST00000502850 TRPM4Q8TD43 1214 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 PLEKHO2Q8TD55 490 aa12.89□□□□□ -0.35
NUP54-202ENST00000502850 SLC20A1Q8WUM9 679 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms