RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 RGS3P49796 1198 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 VGLL4Q14135 290 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 TAF3Q5VWG9 929 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 SPTY2D1Q68D10 685 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 POMZP3Q6PJE2 187 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 CENPQQ7L2Z9 268 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 ANKRD13AQ8IZ07 590 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 LINC01356Q8N9X3 169 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 FNIP1Q8TF40 1166 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 FRS2Q8WU20 508 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 COPS5Q92905 334 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 EDC3Q96F86 508 aaKnown RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 WNK4Q96J92 1243 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 MRGPRX3Q96LB0 322 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 LRRCC1Q9C099 1032 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 ADAM7Q9H2U9 754 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 RAI14Q9P0K7 980 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 LRP2BPQ9P2M1 347 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 ENTPD3O75355 529 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 IDH1O75874 414 aaKnown RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 ITGAVP06756 1048 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 IFIT2P09913 472 aaKnown RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 NCAM1P13591 858 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 CTCFP49711 727 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 LBX1P52954 281 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 PICALMQ13492 652 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 SF1Q15637 639 aaKnown RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 WWC2Q6AWC2 1192 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 MRM1Q6IN84 353 aaKnown RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 MIGA2Q7L4E1 593 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 CRACR2BQ8N4Y2 399 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 EXOC6Q8TAG9 804 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 IPO4Q8TEX9 1081 aaKnown RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 NOX5Q96PH1 765 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 SYT3Q9BQG1 590 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 AATFQ9NY61 560 aaKnown RBP eCLIP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 TMEFF2Q9UIK5 374 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-208ENST00000497026 PMF1-BGLAPU3KQ54 211 aa5.82□□□□□ -1.48
CSMD3-208ENST00000497026 SALL3Q9BXA9 1300 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 TRBV23OR9-2A0A075B6M9 112 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 TCRBV5S4A2TA0A5A2 114 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 FSD2A1L4K1 749 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 IGSF3O75054 1194 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 CHGBP05060 677 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 LDHCP07864 332 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 ZBTB48P10074 688 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 NAT2P11245 290 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 ATP5JP18859 108 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 TM4SF4P48230 202 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 DYNLL1P63167 89 aaKnown RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 GSTO1P78417 241 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 PRSS53Q2L4Q9 553 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 NAA16Q6N069 864 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 MAGEB6Q8N7X4 407 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 PLEKHO2Q8TD55 490 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 OTUD7AQ8TE49 926 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 SH3RF3Q8TEJ3 882 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 ANP32BQ92688 251 aaKnown RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 ZKSCAN4Q969J2 545 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 OPTNQ96CV9 577 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 TSPAN17Q96FV3 270 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 PEX11GQ96HA9 241 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 WRNIP1Q96S55 665 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 DNAJC2Q99543 621 aaKnown RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 RIOK1Q9BRS2 568 aaKnown RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 ZNF341Q9BYN7 854 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 OSBPL5Q9H0X9 879 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-208ENST00000497026 NKX2-4Q9H2Z4 354 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 BOLA2Q9H3K6 86 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 CYP26B1Q9NR63 512 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 RNF186Q9NXI6 227 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 SAGE1Q9NXZ1 904 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 PRKAG3Q9UGI9 489 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 ZNF112Q9UJU3 913 aa5.81□□□□□ -1.48
CSMD3-208ENST00000497026 FLT1P17948 1338 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 BAZ2AQ9UIF9 1905 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 ARNTLO00327 626 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 GOLIM4O00461 696 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 CA12O43570 354 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 SUSD5O60279 629 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 MAP4K4O95819 1239 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 SNRPB2P08579 225 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 PDE6AP16499 860 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 FPR2P25090 351 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 DNAJA1P31689 397 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 KCNJ6P48051 423 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 RBM25P49756 843 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 ZNF143P52747 638 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 HDAC1Q13547 482 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 GNL2Q13823 731 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 RRP1BQ14684 758 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 VWA3BQ502W6 1294 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 TSHZ3Q63HK5 1081 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 ZNF227Q86WZ6 799 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 CCDC103Q8IW40 242 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 TEX11Q8IYF3 940 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 MIGA1Q8NAN2 632 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 NETO2Q8NC67 525 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms