RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	LRRC15	Q8TF66	581 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	KIFC3	Q9BVG8	833 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	PDZD7	Q9H5P4	517 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	NSUN3	Q9H649	340 aa	Known RBP	13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	TBC1D13	Q9NVG8	400 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	SPG21	Q9NZD8	308 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	PUF60	Q9UHX1	559 aa	Known RBP	13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	RCOR1	Q9UKL0	485 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	COG5	Q9UP83	839 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	TNFSF13B	Q9Y275	285 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	PCDHGA4	Q9Y5G9	962 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	EYS	Q5T1H1	3165 aa		13.61	□□□□□ -0.23
MRPL55-233	ENST00000495899	ARL5C	A6NH57	179 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	NCK2	O43639	380 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	NPTXR	O95502	500 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	KRT18	P05783	430 aa	Known RBP	13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	ABCD1	P33897	745 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	BCAR1	P56945	870 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	RNASEL	Q05823	741 aa	Known RBP	13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	CAMK1	Q14012	370 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	GIT2	Q14161	759 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	DHX8	Q14562	1220 aa	Known RBP	13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	DCAF4L1	Q3SXM0	396 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	NT5DC1	Q5TFE4	455 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	ATF7IP2	Q5U623	682 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	SV2B	Q7L1I2	683 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	TMEM161B	Q8NDZ6	487 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	POF1B	Q8WVV4	589 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	REEP2	Q9BRK0	252 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	MRPL4	Q9BYD3	311 aa	Known RBP	13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	HCST	Q9UBK5	93 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	INPP5F	Q9Y2H2	1132 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	ZDHHC9	Q9Y397	364 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	HES2	Q9Y543	173 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	ATP6V1D	Q9Y5K8	247 aa		13.6	□□□□□ -0.23
MRPL55-233	ENST00000495899	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	SLC16A4	O15374	487 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	FAM13A	O94988	1023 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	ALDH2	P05091	517 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	MAPT	P10636	758 aa	Known RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	LIG1	P18858	919 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	DNAJB1	P25685	340 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	NCKAP1L	P55160	1127 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	STRN3	Q13033	797 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	SKIV2L	Q15477	1246 aa	Known RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	CDR2L	Q86X02	465 aa	Predicted RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	SLC39A11	Q8N1S5	342 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	MYCT1	Q8N699	235 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	MRPS27	Q92552	414 aa	Known RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	HLA-C	Q95604	372 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	PPP2R3C	Q969Q6	453 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	ACO2	Q99798	780 aa	Known RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	TMEM175	Q9BSA9	504 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	CUEDC2	Q9H467	287 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	NXF3	Q9H4D5	531 aa	Known RBP	13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	NRDE2	Q9H7Z3	1164 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	PARVG	Q9HBI0	331 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	THEG	Q9P2T0	379 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	STK39	Q9UEW8	545 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	RALGAPA2	Q2PPJ7	1873 aa		13.59	□□□□□ -0.23
MRPL55-233	ENST00000495899	TRAK2	O60296	914 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	TBCA	O75347	108 aa	Known RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	EDN1	P05305	212 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	GALT	P07902	379 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	HOXB3	P14651	431 aa	Predicted RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	AKAP5	P24588	427 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	MLH1	P40692	756 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	STAT6	P42226	847 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	ME1	P48163	572 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	AFF1	P51825	1210 aa	Known RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	DNM1	Q05193	864 aa	Known RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	COL19A1	Q14993	1142 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	AAK1	Q2M2I8	961 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	ZPBP2	Q6X784	338 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	TAS1R3	Q7RTX0	852 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	HAUS6	Q7Z4H7	955 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	ZNF280B	Q86YH2	543 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	FAM193B	Q96PV7	902 aa	Predicted RBP	13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	GAD1	Q99259	594 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	PANK2	Q9BZ23	570 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	LRRC27	Q9C0I9	530 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	PTPRH	Q9HD43	1115 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	TLR9	Q9NR96	1032 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	PARP2	Q9UGN5	583 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	PRUNE2	Q8WUY3	3088 aa		13.58	□□□□□ -0.24
MRPL55-233	ENST00000495899	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	NR1I2	O75469	434 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	TOM1L1	O75674	476 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	DDHD2	O94830	711 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	POMC	P01189	267 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	MCF2	P10911	925 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	PROZ	P22891	400 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	KRT85	P78386	507 aa		13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	MRPS5	P82675	430 aa	Known RBP	13.57	□□□□□ -0.24
MRPL55-233	ENST00000495899	TCEAL5	Q5H9L2	206 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms