RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 TBX20Q9UMR3 447 aa21.17■□□□□ 0.98
CCM2-216ENST00000488727 RHOBTB3O94955 611 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 GCNT3O95395 438 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 KCNA1Q09470 495 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 STK4Q13043 487 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 PRPF4BQ13523 1007 aaKnown RBP21.16■□□□□ 0.98
CCM2-216ENST00000488727 IKBKEQ14164 716 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 CEP135Q66GS9 1140 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 KIAA0895Q8NCT3 520 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 SLC17A8Q8NDX2 589 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 ADAM2Q99965 735 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 FTHL17Q9BXU8 183 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 UBE2OQ9C0C9 1292 aaKnown RBP21.16■□□□□ 0.98
CCM2-216ENST00000488727 SLC39A2Q9NP94 309 aa21.16■□□□□ 0.98
CCM2-216ENST00000488727 SAMSN1Q9NSI8 373 aaKnown RBP21.16■□□□□ 0.98
CCM2-216ENST00000488727 CXXC1Q9P0U4 656 aaPredicted RBP21.16■□□□□ 0.98
CCM2-216ENST00000488727 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 CCP110O43303 1012 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 KCNB1Q14721 858 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 NR1I3Q14994 352 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 EPM2AIP1Q7L775 607 aaPredicted RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 APTXQ7Z2E3 356 aaKnown RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 CDR2LQ86X02 465 aaPredicted RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 TSPYL2Q9H2G4 693 aaPredicted RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 CHST12Q9NRB3 414 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 ABHD14A-ACY1A0A1B0GW23 586 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 CTIFO43310 598 aaKnown RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 BAIAP3O94812 1187 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 TUBB4AP04350 444 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 ACTN1P12814 892 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 STRN3Q13033 797 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 SHHQ15465 462 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 ZNF658Q5TYW1 1059 aaPredicted RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 SPECC1LQ69YQ0 1117 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.15■□□□□ 0.98
CCM2-216ENST00000488727 MAP4K3Q8IVH8 894 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 HERVK_113Q902F9 699 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 TARS2Q9BW92 718 aaKnown RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 IKZF4Q9H2S9 585 aa21.15■□□□□ 0.98
CCM2-216ENST00000488727 LAMA2P24043 3122 aaKnown RBP21.15■□□□□ 0.98
CCM2-216ENST00000488727 A0A1B0GUA9 196 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 ENPP3O14638 875 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 PRPF6O94906 941 aaKnown RBP21.14■□□□□ 0.97
CCM2-216ENST00000488727 ZSCAN20P17040 1043 aaPredicted RBP21.14■□□□□ 0.97
CCM2-216ENST00000488727 SCP2P22307 547 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 AXLP30530 894 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 BMP8BP34820 402 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 WDR5P61964 334 aaKnown RBP21.14■□□□□ 0.97
CCM2-216ENST00000488727 MTERF4Q7Z6M4 381 aaKnown RBP21.14■□□□□ 0.97
CCM2-216ENST00000488727 MRPL4Q9BYD3 311 aaKnown RBP21.14■□□□□ 0.97
CCM2-216ENST00000488727 PRO3102Q9H379 93 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 PDZD7Q9H5P4 517 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 RGS18Q9NS28 235 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 RWDD2AQ9UIY3 292 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 TTC3P53804 2025 aa21.14■□□□□ 0.97
CCM2-216ENST00000488727 PSMD2Q13200 908 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 ALCAMQ13740 583 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 UBXN11Q5T124 520 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 RASIP1Q5U651 963 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 EEF1DP3Q658K8 133 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 NOTUMQ6P988 496 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 CHRDL2Q6WN34 429 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 SCFD1Q8WVM8 642 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 HVCN1Q96D96 273 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 PPP1R13BQ96KQ4 1090 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 ACO2Q99798 780 aaKnown RBP21.13■□□□□ 0.97
CCM2-216ENST00000488727 GDAQ9Y2T3 454 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 PCDHB13Q9Y5F0 798 aa21.13■□□□□ 0.97
CCM2-216ENST00000488727 ZBBXA8MT70 800 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 C9IYK1 514 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 ABCD1P33897 745 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 HOXD13P35453 343 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 DEFB103AP81534 67 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 NCBP1Q09161 790 aaKnown RBP21.12■□□□□ 0.97
CCM2-216ENST00000488727 ATF7IP2Q5U623 682 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 TWF2Q6IBS0 349 aaKnown RBP21.12■□□□□ 0.97
CCM2-216ENST00000488727 TMEM139Q8IV31 216 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 CCDC47Q96A33 483 aaKnown RBP21.12■□□□□ 0.97
CCM2-216ENST00000488727 ABLIM1O14639 778 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 EIF3DO15371 548 aaKnown RBP eCLIP21.12■□□□□ 0.97
CCM2-216ENST00000488727 PIGRP01833 764 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 SYCP1Q15431 976 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 KLHL10Q6JEL2 608 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 SLC39A4Q6P5W5 647 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 FAM43BQ6ZT52 329 aaPredicted RBP21.12■□□□□ 0.97
CCM2-216ENST00000488727 TRAIPQ9BWF2 469 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 EIF2AQ9BY44 585 aaKnown RBP21.12■□□□□ 0.97
CCM2-216ENST00000488727 PTPRHQ9HD43 1115 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 TRMT1Q9NXH9 659 aaKnown RBP21.12■□□□□ 0.97
CCM2-216ENST00000488727 CTNND2Q9UQB3 1225 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 TNFSF13BQ9Y275 285 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 ZMYM2Q9UBW7 1377 aa21.12■□□□□ 0.97
CCM2-216ENST00000488727 TISP43B9A030 160 aa21.11■□□□□ 0.97
CCM2-216ENST00000488727 HNRNPDLO14979 420 aaKnown RBP21.11■□□□□ 0.97
CCM2-216ENST00000488727 EFCAB14O75071 495 aa21.11■□□□□ 0.97
CCM2-216ENST00000488727 PBX1P40424 430 aa21.11■□□□□ 0.97
CCM2-216ENST00000488727 SPAG1Q07617 926 aa21.11■□□□□ 0.97
CCM2-216ENST00000488727 PAK1Q13153 545 aa21.11■□□□□ 0.97
CCM2-216ENST00000488727 TMEM132AQ24JP5 1023 aa21.11■□□□□ 0.97
CCM2-216ENST00000488727 HSP90AA4PQ58FG1 418 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms