RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZCWPW1Q9H0M4 648 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 ADAM22Q9P0K1 906 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 ZFATQ9P243 1243 aa14.4□□□□□ -0.1
USP42-206ENST00000479544 SUCLA2Q9P2R7 463 aaPredicted RBP14.4□□□□□ -0.1
USP42-206ENST00000479544 PIK3CAP42336 1068 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 CDK17Q00537 523 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 DEUP1Q05D60 604 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 ANKRD20A2Q5SQ80 823 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 SH2D4BQ5SQS7 431 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 ANKRD20A1Q5TYW2 823 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 RFX6Q8HWS3 928 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 DCLK2Q8N568 766 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 MSL3Q8N5Y2 521 aaKnown RBP14.39□□□□□ -0.11
USP42-206ENST00000479544 CDC42EP4Q9H3Q1 356 aaKnown RBP14.39□□□□□ -0.11
USP42-206ENST00000479544 SMYD2Q9NRG4 433 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 ZBTB5O15062 677 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 SLC16A4O15374 487 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 AKAP3O75969 853 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 CBX6O95503 412 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 BRDTQ58F21 947 aaPredicted RBP14.39□□□□□ -0.11
USP42-206ENST00000479544 FRMD5Q7Z6J6 570 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 PPM1NQ8N819 430 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 CPA5Q8WXQ8 436 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 SNF8Q96H20 258 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 NACC1Q96RE7 527 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 RIOK1Q9BRS2 568 aaKnown RBP14.39□□□□□ -0.11
USP42-206ENST00000479544 MAD2L2Q9UI95 211 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 MEGF6O75095 1541 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 MYO3BQ8WXR4 1341 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 FAM47DPA6NHR8 397 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 LRRIQ4A6NIV6 560 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 FMO5P49326 533 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 BTKQ06187 659 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 PDIK1LQ8N165 341 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 ACSF2Q96CM8 615 aaPredicted RBP14.39□□□□□ -0.11
USP42-206ENST00000479544 ZNF512BQ96KM6 892 aaPredicted RBP14.39□□□□□ -0.11
USP42-206ENST00000479544 FIS1Q9Y3D6 152 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 FMN2Q9NZ56 1722 aa14.39□□□□□ -0.11
USP42-206ENST00000479544 CAPN9O14815 690 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 CREB3O43889 395 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 CPP00450 1065 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 SEPT6Q14141 434 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 P3H1Q32P28 736 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 MORC4Q8TE76 937 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 PPP4R1Q8TF05 950 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 THTPAQ9BU02 230 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 TEKT3Q9BXF9 490 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ANAPC4Q9UJX5 808 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 COMMD10Q9Y6G5 202 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 MX2P20592 715 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 RNASELQ05823 741 aaKnown RBP14.38□□□□□ -0.11
USP42-206ENST00000479544 SCARA5Q6ZMJ2 495 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ZNF34Q8IZ26 560 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ST13P4Q8IZP2 240 aaPredicted RBP14.38□□□□□ -0.11
USP42-206ENST00000479544 SCFD1Q8WVM8 642 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 TEKT1Q969V4 418 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 POP1Q99575 1024 aaKnown RBP14.38□□□□□ -0.11
USP42-206ENST00000479544 PCSK1NQ9UHG2 260 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ATP5HO75947 161 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ARSEP51690 589 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 PARD3BQ8TEW8 1205 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 MTFR1LQ9H019 292 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ANGPTL2Q9UKU9 493 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 ZNF711Q9Y462 761 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 SHOX2O60902 331 aaPredicted RBP14.38□□□□□ -0.11
USP42-206ENST00000479544 RASA1P20936 1047 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 PDIA5Q14554 519 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 CEP120Q8N960 986 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 STK33Q9BYT3 514 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 NEUROG2Q9H2A3 272 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 GRIN2DO15399 1336 aa14.38□□□□□ -0.11
USP42-206ENST00000479544 COL22A1Q8NFW1 1626 aaPredicted RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 CASQ2O14958 399 aaPredicted RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 RPL21P46778 160 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 TPD52P55327 224 aaPredicted RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 CUL3Q13618 768 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 RASSF3Q86WH2 238 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 ACTRT1Q8TDG2 376 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 SLC20A1Q8WUM9 679 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 SNRNP27Q8WVK2 155 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 PPWD1Q96BP3 646 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 NUF2Q9BZD4 464 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 TMEM117Q9H0C3 514 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 CARD9Q9H257 536 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 RHBDL2Q9NX52 303 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 NDE1Q9NXR1 346 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 NXF1Q9UBU9 619 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 PITPNM2Q9BZ72 1349 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 SYNJ2BP-COX16A0A087WUM0 186 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 ADAMTS3O15072 1205 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 CYP11B2P19099 503 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 EPHB2P29323 1055 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 VAMP7P51809 220 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 OSTNP61366 133 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 THOC5Q13769 683 aaKnown RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 RNF168Q8IYW5 571 aaPredicted RBP14.37□□□□□ -0.11
USP42-206ENST00000479544 PWWP2AQ96N64 755 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 ACCSQ96QU6 501 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 FERMT1Q9BQL6 677 aa14.37□□□□□ -0.11
USP42-206ENST00000479544 ACP6Q9NPH0 428 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms