RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 HSF5Q4G112 596 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 HEATR3Q7Z4Q2 680 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SLC13A5Q86YT5 568 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PNMA1Q8ND90 353 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 RAB3IL1Q8TBN0 382 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 N4BP2L2Q92802 583 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 MAGEB18Q96M61 343 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SEMA4AQ9H3S1 761 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PLK2Q9NYY3 685 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PDP2Q9P2J9 529 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 VPS28Q9UK41 221 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PADI4Q9UM07 663 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FAM170AA1A519 330 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 TTC36A6NLP5 189 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FAM155AB1AL88 458 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 NCK2O43639 380 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 AKAP3O75969 853 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 IL1R1P14778 569 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SCP2P22307 547 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FOXN2P32314 431 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SLC18A2Q05940 514 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 TMEM266Q2M3C6 531 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SH2D4BQ5SQS7 431 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DDX1Q92499 740 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 ITPKCQ96DU7 683 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 RTP4Q96DX8 246 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SYNCQ9H7C4 482 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 AJAP1Q9UKB5 411 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DRG1Q9Y295 367 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 USH1CQ9Y6N9 552 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 COL4A4P53420 1690 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 BIRC5O15392 142 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 MAN1A1P33908 653 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 KLK7P49862 253 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 KLHDC8BQ8IXV7 354 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FAM71AQ8IYT1 594 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SKA1Q96BD8 255 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DDX27Q96GQ7 796 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 UIMC1Q96RL1 719 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 VPS11Q9H270 941 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DHX33Q9H6R0 707 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 INCENPQ9NQS7 918 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 ABCF3Q9NUQ8 709 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PP2D1A8MPX8 630 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 DAPK3O43293 454 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CD48P09326 243 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 PON1P27169 355 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 GALCP54803 685 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 MCL1Q07820 350 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 STXBP5Q5T5C0 1151 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SLF2Q8IX21 1173 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 ARHGAP18Q8N392 663 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FLAD1Q8NFF5 587 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SLC35B2Q8TB61 432 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 EPAS1Q99814 870 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 RGL1Q9NZL6 768 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 KCNG1Q9UIX4 513 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 JAG2Q9Y219 1238 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SUGT1Q9Y2Z0 365 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CAPN14A8MX76 684 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CTNND1O60716 968 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 TNNI2P48788 182 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 RTP1P59025 263 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF174Q15697 407 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 ERICH1Q86X53 443 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 SYT2Q8N9I0 419 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CAPZA3Q96KX2 299 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 BTBD9Q96Q07 612 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FMO2Q99518 471 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 NTPCRQ9BSD7 190 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FGFBP2Q9BYJ0 223 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 STMN4Q9H169 189 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 BLZF1Q9H2G9 400 aa5.74□□□□□ -1.49
SYNE1-220ENST00000471834 CNOT11Q9UKZ1 510 aaKnown RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 FARP1Q9Y4F1 1045 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 COL16A1Q07092 1604 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-220ENST00000471834 KDM3AQ9Y4C1 1321 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 MAP3K13O43283 966 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PPP1R12BO60237 982 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 ZMYND10O75800 440 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 STAT6P42226 847 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 COASYQ13057 564 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 Q3C1V9 767 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 IFIT1BQ5T764 474 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 DPH6Q7L8W6 267 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SLC17A8Q8NDX2 589 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CALML4Q96GE6 196 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PACSIN1Q9BY11 444 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 DENND2DQ9H6A0 471 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 ERVK-5Q9HDB9 667 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 HAO1Q9UJM8 370 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 STYXL1Q9Y6J8 313 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 ASTN2O75129 1339 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF701M0R085 212 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 CEBPAP49715 358 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 MAGOHP61326 146 aaKnown RBP5.73□□□□□ -1.49
SYNE1-220ENST00000471834 PDE4DQ08499 809 aa5.73□□□□□ -1.49
SYNE1-220ENST00000471834 SETDB1Q15047 1291 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms