RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DCAF12L1Q5VU92 463 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 MIS18BP1Q6P0N0 1132 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.25■□□□□ 0.19
LDLR-202ENST00000455727 PPM1KQ8N3J5 372 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 POMGNT1Q8WZA1 660 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 KAT5Q92993 513 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 CCDC127Q96BQ5 260 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 RPS6KC1Q96S38 1066 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 ATP6V0A4Q9HBG4 840 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 XPNPEP1Q9NQW7 623 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 RAB20Q9NX57 234 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 CWC15Q9P013 229 aaKnown RBP16.25■□□□□ 0.19
LDLR-202ENST00000455727 ARHGAP28Q9P2N2 729 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 ALG6Q9Y672 507 aa16.25■□□□□ 0.19
LDLR-202ENST00000455727 FGGP02679 453 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 ITGA4P13612 1032 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 POU5F1Q01860 360 aaKnown RBP16.24■□□□□ 0.19
LDLR-202ENST00000455727 PRKCEQ02156 737 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 NOP9Q86U38 636 aaKnown RBP16.24■□□□□ 0.19
LDLR-202ENST00000455727 CCDC60Q8IWA6 550 aaPredicted RBP16.24■□□□□ 0.19
LDLR-202ENST00000455727 GPD1LQ8N335 351 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 IFT74Q96LB3 600 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 FAM81BQ96LP2 452 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 NT5C1BQ96P26 610 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 PCDHB18PQ96TA0 734 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 PLEKHA4Q9H4M7 779 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 CTTNBP2NLQ9P2B4 639 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 AFG3L2Q9Y4W6 797 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 ADGRA3Q8IWK6 1321 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 A6NNZ2 444 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 ZC3H11AO75152 810 aaKnown RBP eCLIP16.24■□□□□ 0.19
LDLR-202ENST00000455727 ICAM3P32942 547 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 USP8P40818 1118 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 TUBB8Q3ZCM7 444 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 SH3D19Q5HYK7 790 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 ENOSF1Q7L5Y1 443 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 DNERQ8NFT8 737 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 PIK3R5Q8WYR1 880 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 RNPC3Q96LT9 517 aaKnown RBP16.24■□□□□ 0.19
LDLR-202ENST00000455727 KIAA1586Q9HCI6 787 aa16.24■□□□□ 0.19
LDLR-202ENST00000455727 SEPT9Q9UHD8 586 aaPredicted RBP16.24■□□□□ 0.19
LDLR-202ENST00000455727 SPDYE16A6NNV3 312 aaPredicted RBP16.23■□□□□ 0.19
LDLR-202ENST00000455727 CYP26A1O43174 497 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 ATG7O95352 703 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 SUPT20HL2P0C7V6 817 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 GUCY2FP51841 1108 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 PTENP60484 403 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 SUPT20HL1Q3ZLR7 823 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 PRAMEF18Q5VWM3 479 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 SV2AQ7L0J3 742 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 CHST13Q8NET6 341 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 AMACRQ9UHK6 382 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 ZNF541Q9H0D2 1346 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 WDR90Q96KV7 1748 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 ZNFX1Q9P2E3 1918 aaKnown RBP16.23■□□□□ 0.19
LDLR-202ENST00000455727 HNRNPDLO14979 420 aaKnown RBP16.23■□□□□ 0.19
LDLR-202ENST00000455727 CYP11B1P15538 503 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 HSPA6P17066 643 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 CLDN10P78369 228 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 FMO1Q01740 532 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 CDR2Q01850 454 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 HLTFQ14527 1009 aaKnown RBP eCLIP16.23■□□□□ 0.19
LDLR-202ENST00000455727 SLC47A2Q86VL8 602 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 UBL4BQ8N7F7 174 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 TAS1R2Q8TE23 839 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 LRRC45Q96CN5 670 aa16.23■□□□□ 0.19
LDLR-202ENST00000455727 POP1Q99575 1024 aaKnown RBP16.23■□□□□ 0.19
LDLR-202ENST00000455727 PPP1R1BQ9UD71 204 aaPredicted RBP16.23■□□□□ 0.19
LDLR-202ENST00000455727 GOLGA6L10A0A0M3HER8 536 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 ZNF233A6NK53 670 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 KIAA0391O15091 583 aaKnown RBP16.22■□□□□ 0.19
LDLR-202ENST00000455727 SOX10P56693 466 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 GCNT1Q02742 428 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 STXBP2Q15833 593 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 TTMPQ5BVD1 217 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 LRRC31Q6UY01 552 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 TAS1R3Q7RTX0 852 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 ARL8AQ96BM9 186 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 SYNGAP1Q96PV0 1343 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 FAM114A2Q9NRY5 505 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 GPRC5DQ9NZD1 345 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 MAFBQ9Y5Q3 323 aaPredicted RBP16.22■□□□□ 0.19
LDLR-202ENST00000455727 CYP1A2P05177 515 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 SKOR1P84550 965 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 EMC10Q5UCC4 262 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 LRIG3Q6UXM1 1119 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 C15orf39Q6ZRI6 1047 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 TRPM4Q8TD43 1214 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 ALG3Q92685 438 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 POLR3FQ9H1D9 316 aaPredicted RBP16.22■□□□□ 0.19
LDLR-202ENST00000455727 WNT8AQ9H1J5 351 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 FZD1Q9UP38 647 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 UTP11Q9Y3A2 253 aaKnown RBP16.22■□□□□ 0.19
LDLR-202ENST00000455727 TELO2Q9Y4R8 837 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 STYXL1Q9Y6J8 313 aa16.22■□□□□ 0.19
LDLR-202ENST00000455727 SIP14410 1827 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 SSC5DA1L4H1 1573 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 EXTL3O43909 919 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 PDE6CP51160 858 aa16.21■□□□□ 0.19
LDLR-202ENST00000455727 DDX1Q92499 740 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms